Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00842 ATGGTACAAACAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTATCCGAAATTCGCCACCCACTTCTTAAGAGAAGGGTGTGGCTGGGGACATTTGAAACTGCAGAAGAAGCTGCTAGAGCCTATGATCAAGCTGCCATTTTGATGAGTGGGAGAAATGCCAAAACCAATTTCCCGATAACTCAAACCCCTGAAGGTGATCCCAAGAGCATTACCAGTGAGGACAGCCCCTCCTCCACCTCCAAGGATCTGGAGGAAATCCTGCATGCAAAGCTTCGAAAATGTGGTAAGGTGCCTTCTCCTTCTATGACCTGTTTGAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGTGCTGGGAGACGTTCAGATTCAAATTGGGTCATGACGGTTCAGCTGGGAAAGAAGAGTACCGGCAATGACACTCACCAAGCTGATAGTAGCTCTTCTCTTTCTCTACCTTCTGATCATCGCCACCACCACCACCATGAGTCTCCATCAGGTGTGACAGGTCATCACCATCATCAAGAAGTGGTGAGAGGAGAGATTGACGAAGAAGAGAGAATTGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGAAACTGCCCTAGTCCTTCATTCAACAACATTCAAGAAAGGGATGGTGGCAAATATACACATAAGAAAATAGGAGAGATGTATACTGAATCAATATTTTCAGAGTGCATATATAAAGTGCTCCACCATCTGCTGCTTGTTTGA 765 0.468 MVQTKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSITSEDSPSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKSTGNDTHQADSSSSLSLPSDHRHHHHHESPSGVTGHHHHQEVVRGEIDEEERIALQMIEELLNDRNCPSPSFNNIQERDGGKYTHKKIGEMYTESIFSECIYKVLHHLLLV* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00842 254 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lapu3g00842 254 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Lapu3g00842 254 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lapu3g00842 254 MobiDBLite consensus disorder prediction 142 186 - -
Lapu3g00842 254 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lapu3g00842 254 MobiDBLite consensus disorder prediction 142 159 - -
Lapu3g00842 254 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Lapu3g00842 254 MobiDBLite consensus disorder prediction 60 82 - -
Lapu3g00842 254 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lapu3g00842 254 MobiDBLite consensus disorder prediction 160 186 - -
Lapu3g00842 254 MobiDBLite consensus disorder prediction 60 86 - -
Lapu3g00842 254 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lapu3g00842 254 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lapu3g00842 254 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lapu3g00842 254 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00842 Lapu-Chr3 9074087 9075341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00842 1 206 AP2-EREBP Transcription Factor Family AT1G15360 61.321 7.48e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g00842 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00842 - - gmx:100814893 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00842 3 9074087 9075341 Lapu9g01886 9 33662918 33664181 ECH
Lapu3g00842 3 9074087 9075341 Lapu3g00842 3 9074087 9075341 ECH