Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00835 ATGAAGTTGAGGAGAAAGATCGGGAAGTATGAGGTGGGACGAACTATTGGCGAAGGCACCTTCGCTAAGGTCAAGTTCGCGAGAAACTCCGAAACAGGGGAGAGCGTGGCCATTAAAGTGATGGCTAAGACCACCATTCTTCAGCACAGAATGGTTGAGCAGATTAAAAGAGAGATATCCATTATGAAGATTGTCAGGCATCCTAATATAGTCAGATTGCACGAGGTTTTGGCTAGCCACACCAAGATCTACATAATCCTTGAATTTGTGATGGGAGGGGAACTATATGACAAAATTGTTCAGGAGGGAAGACTTTCTGAAAATGAATCTAGGCGCTACTTTCAACAACTTATAGATGCTATTGATCATTGCCATAGAAAGGGTGTGTACCATAGAGACTTGAAGCCTGAAAACCTTCTTCTTGATGCTTATGGAAATTTGAAAGTTTCTGACTTTGGATTGAGTGCATTGACTAAACAGGGTGTTGGCCTTCTTCATACCACTTGTGGGACCCCAAATTATGTTGCCCCTGAGGTGCTTGGCAATCGAGGATATGATGGTGCAGCAGCTGATGTTTGGTCAAGTGGGGTCATCCTGTATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCAGCACTGTACAGAAGGATCAATGCTGCAGAGTATGTCTGCCCATTCTGGTTTTCTGCTGACGCAAAGTCATTTATACATAAAATTCTAGATCCTAATCCAAAAACAAGGGTGAAAATTGAAGGAATAAGGAAAGATCCATGGTTCAAGAAAAACTATTTTCCTGTCCAACTCAGGGAATATGAGCAAGTGAATTTGGATGACGTTCAGGCTGTTTTTGATGATATTGAGGACCATTATGTTGCTGAACGGTCAGAAATTACCGAGGGAGGTCCTTTGATAATGAATGCATTTGAGATGATTGCCTTATCACAAGGGTTGAATCTTTCACCACTGTTTGATAGGCATCAGGATTATGTAAAGCGGCAAACTCGATTTGTCTCCCGTAAACCAGCAAAAGTTATAATTTCTTCTATTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAACTACAAGGTGAGGCTTGAAGGTGTTTCTGCAAACAAGGTTGGCCAATTTGCAGTGGTCTTGGAGGTGTTTGAAGTTGCACCATCCCTTTTCATGGTTGATATTCGGAAGGCAGCTGGGGATACTTTTGACTACCACAAGTTTTACAAGAATTTTTGTACCAAACTCGGAAGCATTATTTGGAGACCGGCAGGGACCATGCCAAATTCTAACACGCTTAAGCAAATGTCTATATAA 1338 0.4223 MKLRRKIGKYEVGRTIGEGTFAKVKFARNSETGESVAIKVMAKTTILQHRMVEQIKREISIMKIVRHPNIVRLHEVLASHTKIYIILEFVMGGELYDKIVQEGRLSENESRRYFQQLIDAIDHCHRKGVYHRDLKPENLLLDAYGNLKVSDFGLSALTKQGVGLLHTTCGTPNYVAPEVLGNRGYDGAAADVWSSGVILYVLMAGYLPFEEADLPALYRRINAAEYVCPFWFSADAKSFIHKILDPNPKTRVKIEGIRKDPWFKKNYFPVQLREYEQVNLDDVQAVFDDIEDHYVAERSEITEGGPLIMNAFEMIALSQGLNLSPLFDRHQDYVKRQTRFVSRKPAKVIISSIEAVAESMGLKVHSRNYKVRLEGVSANKVGQFAVVLEVFEVAPSLFMVDIRKAAGDTFDYHKFYKNFCTKLGSIIWRPAGTMPNSNTLKQMSI* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00835 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lapu3g00835 445 ProSiteProfiles Protein kinase domain profile. 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00835 445 Gene3D Transferase(Phosphotransferase) domain 1 2 308 - -
Lapu3g00835 445 CDD CIPK_C 310 423 - -
Lapu3g00835 445 FunFam Non-specific serine/threonine protein kinase 303 429 - -
Lapu3g00835 445 FunFam Non-specific serine/threonine protein kinase 3 303 - -
Lapu3g00835 445 SUPERFAMILY Protein kinase-like (PK-like) 7 315 IPR011009 -
Lapu3g00835 445 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 414 - -
Lapu3g00835 445 FunFam Non-specific serine/threonine protein kinase 1 89 - -
Lapu3g00835 445 SMART serkin_6 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00835 445 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Lapu3g00835 445 Pfam Protein kinase domain 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00835 445 Pfam NAF domain 306 365 IPR004041 GO:0007165
Lapu3g00835 445 Gene3D Kinase associated domain 1, KA1 309 429 - -
Lapu3g00835 445 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00835 Lapu-Chr3 8987552 8998599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00835 2 371 CBL-interacting serine-threonine protein kinases AT5G35410 73.784 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu3g00835 Pkinase 3.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00835 - - gmx:100811380 832.017