Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00831 ATGACGAGCTGCGGCATCGATGTTGCGCCTGAGCAACTCTGTTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGCGTTCCATGCAGCAGCCTGTTTGACATTGTGACCGTTCGATGTGGGCACTGCACTAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGAACTGCAACCCAGAGTACAGGATTGAGACTGGCTCCACCTCCAAATGCAACAACAGGATTGCAATGCGTCCACCCACCACTCATGTAACTGAGGAAAGGGTTGTGAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCAAAAAACTGGGCACATTTTCCTCATATTCACTTTGGGCTGATGCTGGACAACAACAACAACCAAGCTAAGATGGAGAATGTTTCTGAGAAGCATTTAATGTCAAGGGCTGCCCTAATGAATAAATGA 564 0.4752 MTSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGNCNPEYRIETGSTSKCNNRIAMRPPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLDNNNNQAKMENVSEKHLMSRAALMNK* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00831 187 CDD HMG-box_SF 113 149 - -
Lapu3g00831 187 PANTHER PROTEIN YABBY 6-RELATED 9 171 IPR006780 GO:0007275
Lapu3g00831 187 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Lapu3g00831 187 SUPERFAMILY HMG-box 102 152 IPR036910 -
Lapu3g00831 187 Gene3D High mobility group box domain 98 156 IPR036910 -
Lapu3g00831 187 FunFam Axial regulator YABBY 104 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00831 Lapu-Chr3 8916037 8919976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00831 8 170 C2C2-YABBY Transcription Factor Family AT2G26580 76.074 3.99e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lapu3g00831 YABBY 5.4e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00831 K25796 - gmx:100499942 370.548