Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00818 CTTATTATTCTTCATATACTTGTTATGGAGCTTCAACTCTGTCTCACTCTCTCAACCAATCCCTCTCAACTCCTCGACCTCAATTCTCGTGCCTATGACTCTATCTTCGACCAAAATTCCAATGATGCACCACAAACTCTCCACACCGACTTTATCCTTCCTACGCTCTCTCTTCTTCCTTTCACGCCAATCCACCCTGATGATCACCGCACCCAATTCTCTTACATCTCCAAGAACGACGAAGATGATGTAGAAGGTGTAGTGGGTTGGCCACCTGTAAACTACTGGAGGAAGAAGCTTCGTGTCGATAACTGCGGTGACAACGATGAGGTTGTAGGGAATAACGATCACATGGTCTGGGTTGACCGGTCTCCTGGCCATGGTAGTTTTGCCACCGGAGGATCCAATTCTCAGTACGTGAAGGTGAAGATGGAGGGTGTGGGAATAGCACGGAAGGTCGACCTTGGCATGCACCAGTCCTTTCAGACTCTTATGGAAACCTTGATTGACATGTTTGGAAAATGTCATCAAGAATCAAATAGCTATGAACTGGCTTATCAGGACAAGGAGGGTGACTGGCTCCTCGCAAAAGATGTACCTTGGAGAAGTTTCGTTGGGTGTGCACGACGACTGAAATTGCTGAAGAGAAGCAGATGA 657 0.4703 LIILHILVMELQLCLTLSTNPSQLLDLNSRAYDSIFDQNSNDAPQTLHTDFILPTLSLLPFTPIHPDDHRTQFSYISKNDEDDVEGVVGWPPVNYWRKKLRVDNCGDNDEVVGNNDHMVWVDRSPGHGSFATGGSNSQYVKVKMEGVGIARKVDLGMHQSFQTLMETLIDMFGKCHQESNSYELAYQDKEGDWLLAKDVPWRSFVGCARRLKLLKRSR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00818 218 Pfam AUX/IAA family 179 217 IPR033389 -
Lapu3g00818 218 Pfam AUX/IAA family 81 176 IPR033389 -
Lapu3g00818 218 ProSiteProfiles PB1 domain profile. 137 218 IPR000270 GO:0005515
Lapu3g00818 218 SUPERFAMILY CAD & PB1 domains 128 213 - -
Lapu3g00818 218 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 50 217 IPR003311 GO:0005634|GO:0006355
Lapu3g00818 218 Gene3D - 132 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00818 Lapu-Chr3 8747432 8748794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00818 123 216 B3 DNA Binding Superfamily AT1G34390 32.990 3.17e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu3g00818 AUX_IAA 1.6e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00818 K14484 - gmx:100808466 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00818 3 8747432 8748794 Lapu3g00818 3 8747432 8748794 ECH