Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00795 ATGGCTATTTCTGCGTTATTCTTGGTTCTATTGCTGCAATTGTCAACAATTTTTGGCTCTGAGGTTGTCTTACAGTCAAAGGAATGTGGCACTGATTGGGTGGCACATTCATATTCTAGTCATGGTCAGGAACTTTTCTACATAAACGTCAATGTAGTCAGCAAGGTTGCTTTCTGTGAGGCTCTCCAATTGTATGCTGAAAAGGGGTGTGATGTGAAGGACTACTTTGGAAGTGTCAAATGTGTGACGGATGTTTCTTTTGTGGATTTTCCTTTAAGGGCAGGGAGGAAACTTCTGAAAAAGGATTCAAAGAACGAATCCACGTCGCAAGGAGATTCTAAGCATCTGTCAGCCCACGTTGTTGGCATTTCTGCAGGGGGAGCTTTGTTTGCATGTTGTCTTGTTCTTTGTCCTTGTTTCTTTAGCAAGAGAAGGAAAGCAACTTCTCATGCTGTTCTGTCCAAGGACCCCAATTCAATGGATTCGGTTTCCTCCTTCGAAGCCTCCGTTACTGACAAGATTCCGGCCAGTCCACTTCGGGTGCCAGCTAGTCCGTCAAGATTCTCAATGTCTCCAAAACTCAGTAGACTTCAATCATTGCATCTCAATTTGAACCAAGTTACAAGAGCTACACATAACTTCTCAGAAACATTGCAAATAGGAGAAGGGGGTTTTGGAACTGTCTACAAGGCCAAGTTAGAAGATGGCCTGGTCGTGGCTGTAAAACGTGCAAAAAAGGAACATTTTGATTCTTTGAGAACGGAATTCAGCAGTGAAGTTGAACTTCTGGCCAAAATTGATCATCGAAACCTGGTGAAGTTACTAGGTTATATTGACAAAGGAAATGAACGCCTTCTTATTACAGAGTTTGTGCCAAATGGTACCCTTAGAGAACATTTGGATGGTATGCGTGGAAAAACACTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCTTGACCTATCTGCATCTGTATGCAGAAAAGCAAATTATCCATCGAGACGTGAAATCATCCAACATTCTTCTGACGGAAAGCATGCGAGCTAAAGTTGCTGATTTTGGATTTGCAAAGCTAGGGCCGGTGAACACTGATCAAACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGACCCTGAGTATATGAAAACATACCAACTCACTCCCAAGAGTGACGTTTACTCATTTGGAATTTTACTTTTAGAAATTGTGTCTGGCCGCCGTCCTGTTGAGTTGAAGAAAACTGTTGAAGAGCGGGTTACACTTAGATGGGCCTTCAGGAAGTACAACGAAGGAAATGTGGTGGAACTGGTGGATCCTTTAATGAAAGAAGCAGTAAACGGAGATGTTCTCATGAAGATGTTTGATTTGGCATTTCAATGTGCAGCACCCGTTAGAACAGATAGACCTGACATGAAATCAGTGAGCGAGCAATTGTGGGCAATAAGGGCAGCTTACCTCAAGAGTGCAAGGAGAGGAGCATAA 1506 0.427 MAISALFLVLLLQLSTIFGSEVVLQSKECGTDWVAHSYSSHGQELFYINVNVVSKVAFCEALQLYAEKGCDVKDYFGSVKCVTDVSFVDFPLRAGRKLLKKDSKNESTSQGDSKHLSAHVVGISAGGALFACCLVLCPCFFSKRRKATSHAVLSKDPNSMDSVSSFEASVTDKIPASPLRVPASPSRFSMSPKLSRLQSLHLNLNQVTRATHNFSETLQIGEGGFGTVYKAKLEDGLVVAVKRAKKEHFDSLRTEFSSEVELLAKIDHRNLVKLLGYIDKGNERLLITEFVPNGTLREHLDGMRGKTLDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFAKLGPVNTDQTHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEIVSGRRPVELKKTVEERVTLRWAFRKYNEGNVVELVDPLMKEAVNGDVLMKMFDLAFQCAAPVRTDRPDMKSVSEQLWAIRAAYLKSARRGA* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00795 501 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 291 500 - -
Lapu3g00795 501 CDD STKc_IRAK 220 486 - -
Lapu3g00795 501 SMART serkin_6 214 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00795 501 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 186 290 - -
Lapu3g00795 501 ProSitePatterns Protein kinases ATP-binding region signature. 220 246 IPR017441 GO:0005524
Lapu3g00795 501 ProSiteProfiles Protein kinase domain profile. 214 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00795 501 SUPERFAMILY Protein kinase-like (PK-like) 196 489 IPR011009 -
Lapu3g00795 501 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 100 491 - -
Lapu3g00795 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Lapu3g00795 501 Pfam Protein tyrosine and serine/threonine kinase 219 486 IPR001245 GO:0004672|GO:0006468
Lapu3g00795 501 Gene3D Phosphorylase Kinase; domain 1 183 290 - -
Lapu3g00795 501 Gene3D Transferase(Phosphotransferase) domain 1 291 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00795 Lapu-Chr3 8388822 8393425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00795 199 492 Receptor kinase-like Gene Family AT5G59700 45.918 1.30e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Lapu3g00795 PK_Tyr_Ser-Thr 4.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00795 - - gmx:100798260 882.478