Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00794 ATGTCCACAAACCACCCCAGCAATGGAGACACTGAAACTCTCCTTCGTCAAGCTCTGTTGTCTTCTTCCCAGAGATCCATTGTCAACTCCACGTCCCAGGTTGCTATTGTCGGCGTCAATGTCAGCCCAATTGAGAGCCTCGACTACGAGATTTTTGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGAAGGCTCAGATATTTCAGTACATTTTTATGAAATGGCTCTTGTGCTTTCTCGTTGGCATGATCGTTAGCCTTGTTGGCTTCTGCAACAATCTCGCGGTTGAGAATCTCGCGGGCATAAAGTTTGTGGTCACCTCCAATATGATGTTGGAGAAGAGGTTTCAGTTGGCCTTCTTTATATTTTTTGTTTCTAATTTGGGTCTCACGCTTTTTGCCTCCTTAATCACGGCTTTGATAGCACCTACAGCCACTGGTTCAGGTATACCTGAGGTGAAGGCATACCTAAATGGTGTGGACGCACCTGGGATATTTACTGTGCGAACTCTTTTTGTTAAGATTATTGGAAGCATTACAGCAGTGTCTTCATCGCTTCTTATAGGGAAGGCAGGGCCTATGGTTCATACAGGTGCATGTGTAGCAGCATTGTTCAGTCAGGGTGGGTCGAAGAGATATGGGTTAACGTGGAAATGGTTACAGTTTTTTAAGAACGACCGAGATCGAAGAGATCTAATAACCTGTGGATCAGCGGCTGGAATTGCTGCTGCCTTTCGTGCCCCTGTTGGTGGTGTGTTGTTTGCTCTAGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCTTCATTGATCTATGTTTAAGTGGTAAATGTGGGCTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCAAGTATTTCATATCATTTGGTGGATCTTCCTCCAGTGTTTATTCTTGGTGTTATAGGGGGGATACTTGGCAGCTTATTTAATTTGCTGTTGAGCAAAGTTCTTCGGATATACAATTTTATCAACGAGAAAGGAACCATTTTTAAAATTTTGCTTGCTTGTGTAATCTCCATTTTTACATCCTGCCTTCTTTTTGGTTTGCCATGGTTAACTTCTTGCCGACCTTGTCCACCCAATCCAACTGAACCATGTCCTACAATAGGGCGGTCTGGTATCTACAAGAAGTTCCAGTGCGCTCCTAATCAATACAATGATCTCGCAAGCCTCATTTTCAACACAAATGATGATGCTATTAGAAATCTATTTAGCAAGAATACTGATGACGAGTTTGAGTTTACATCAATGCTAATCTTTTTCATTACATGCTTTCTTTTGAGTATCTTTAGCTATGGAGTTGTTGTTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCATCTTATGGACGCATTGTTGGAATGTTGCTTGGCAAAAACTCCAATCTTAACCATGGTCTTTTTGCTGTGCTTGGTGCTGCTTCCTTTCTTGGTGGATCCATGAGGACGACAGTTTCTCTGTGTGTAATTATTCTAGAACTGACCAACAATCTGTTATTGCTACCCGTAATCATGATGGTGCTATTCATATCTAAGACTGTTGCAGATGCTTTCAACGCAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCTTATTTAGAAACTCACGCGGAACCTTATATGAGGCAGCTAACTGTAGGTGATGTAGTAACAGGCCCACTGCAGACGTTTAATGGCATTGAAAAGGTTCGTAACATTGTGTTTATTCTCAAAACTACAGGACATAATGGGTTTCCTGTTATTGACGAGCCTCCTATTTCGGAAGCTCCAGTATTGTTTGGCATAATCCTTCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATGTCTTCACCTTTGGCAACCCGTGGCGATGTCCTCAATAAGTTTTCAGCTGATGATTTTGCAAAGAAGGGTTCTAGCAAAGTTCGTCTAAAGATAGAAGATATACAGTTATCGGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTAGAGAGCTTGGTTTAAGGCATCTGCTTGTGATTCCCAAGATTTCTAGTAGATCACCTGTGGTTGGTATACTCACACGGCACGATTTCATGCCAGAACATATTTTGGGCTTGCATCCCTTTCTGGTAAGAAACAGAGGGAAAAGATTAAGATTTTAG 2301 0.4198 MSTNHPSNGDTETLLRQALLSSSQRSIVNSTSQVAIVGVNVSPIESLDYEIFENEFFKQDWRSRGKAQIFQYIFMKWLLCFLVGMIVSLVGFCNNLAVENLAGIKFVVTSNMMLEKRFQLAFFIFFVSNLGLTLFASLITALIAPTATGSGIPEVKAYLNGVDAPGIFTVRTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALFSQGGSKRYGLTWKWLQFFKNDRDRRDLITCGSAAGIAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAFIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDLPPVFILGVIGGILGSLFNLLLSKVLRIYNFINEKGTIFKILLACVISIFTSCLLFGLPWLTSCRPCPPNPTEPCPTIGRSGIYKKFQCAPNQYNDLASLIFNTNDDAIRNLFSKNTDDEFEFTSMLIFFITCFLLSIFSYGVVVPAGLFVPVIVTGASYGRIVGMLLGKNSNLNHGLFAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPVIMMVLFISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGIEKVRNIVFILKTTGHNGFPVIDEPPISEAPVLFGIILRDHLLTLLKKKAFMSSPLATRGDVLNKFSADDFAKKGSSKVRLKIEDIQLSEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVIPKISSRSPVVGILTRHDFMPEHILGLHPFLVRNRGKRLRF* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00794 766 SMART cbs_1 586 639 IPR000644 -
Lapu3g00794 766 SMART cbs_1 698 749 IPR000644 -
Lapu3g00794 766 SUPERFAMILY CBS-domain pair 569 745 IPR046342 -
Lapu3g00794 766 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lapu3g00794 766 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lapu3g00794 766 PRINTS Plant CLC chloride channel signature 417 433 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lapu3g00794 766 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lapu3g00794 766 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lapu3g00794 766 Gene3D - 567 746 IPR046342 -
Lapu3g00794 766 Pfam Voltage gated chloride channel 133 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu3g00794 766 SUPERFAMILY Clc chloride channel 54 568 IPR014743 -
Lapu3g00794 766 FunFam Chloride channel ClC3 68 384 - -
Lapu3g00794 766 CDD CBS_pair_voltage-gated_CLC_euk_bac 569 747 - -
Lapu3g00794 766 ProSiteProfiles CBS domain profile. 694 755 IPR000644 -
Lapu3g00794 766 Pfam CBS domain 698 744 IPR000644 -
Lapu3g00794 766 Gene3D Clc chloride channel 68 566 - -
Lapu3g00794 766 CDD ClC_6_like 45 566 - -
Lapu3g00794 766 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 19 751 - -
Lapu3g00794 766 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu3g00794 766 PRINTS Chloride channel signature 515 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu3g00794 766 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu3g00794 766 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu3g00794 766 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu3g00794 766 PRINTS Chloride channel signature 497 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lapu3g00794 766 PRINTS Chloride channel signature 553 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00794 Lapu-Chr3 8382544 8388697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00794 8 765 Ion Channels AT5G33280 75.198 0.0 1140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00794 K05016 - gmx:100817901 1343.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00794 3 8382544 8388697 Lapu3g00794 3 8382544 8388697 ECH