Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00765 ATGGGAAGTAATGGTACTGAAAAGATCCCAATCAATAACAGTGCTGAAAGTTCAGAAACCACTATTGAAATAAAGATTAAAACATTGGATTCTCAAACGTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCCCTGAAAGAACAAATTGCTTCTGTAACTGGAGTATTATCTGAACGGCAACGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGATCAGCTCCTGTCCGCGTATCATGTTGAAGATGGTCACACCTTGCATTTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTCTGCCCAATCATTCAGTGACTGAACCGAATTCAAGCTCAAGCCTCTCAAGCCTCAGTCACAGTAGTCAAGTAGCCCCTGGTGTTTTTATTGAGACTTTCAATGTGCCTTTTCAGGGTGATGGAGTTGCACCTGATATCAATAGGATTGTTTCTGCTGTTCTAGGATCCATTGGACTTCAAAACTTTGCGAGTGGTGAAGGGATTGACGTCAGGGAGCATGATTCCCAAGGCCCTGGAAGATCAGGCTCTAGTGGGATATTTGATTCATCTCAGCCTCAACCCGAGCAATCTGGTTTTCGGATTTTGTCTGATAGATCACGTAATACCTTTGGAGCTCCAGCGCCAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAATATTTAAGTCACATAAGCCATGAATTTGATGCAATTGTAAGAGAAGGGGGTGATATTGCCCAGGCAGCTGAGGCTCAAAGGAATGTAGAAACTAGATCTGTTTCTTCACGTTCGGGTTCAACTCCAGAAGGGTTTTCATCTCCCACATTCTTGGCAGAAGTTTTACTTTCTACCAGACGAATGATCGTTGAACAAGCTGGCGAATGCCTACTTCAACTATCAAGACAGCTGGAGAGTCAAGCAGATGTAACTGATCCATTGTTGCGGTCAAGCATCCAGTCTAGGGCTTTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCGTTTTTACTTGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACACCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAACAAGCTTTGGCGCTGTCCCTGTGGGAGCTGCACAGTCTAACTCAAGTTTAGGTAGTGGACTTGGTTCAAGCTTTTTCCCCAGGCGTATAGATATACAGATACGACGAGGTACCTCATCAACAACATCCAATACCAATCAAGAAGAACGCAATGATACACAAACTGCCTCAGTACAAAGAAATCCAGGTGAAATTCCTGTTAATCAGGCCACCTCTAGGCGTCCAGATGCATCTTTTGCTGGGGAAGCAGGAGTAAGGTTAGTGCCTATTAGAACCATGGTTGCGGCAGCAGTACCAGGTCCTGTAGTCCGTCCGCCTTCAGAATCATCTGGTAATTCTATAGGGCTTTACTATCCAATTCTTGGGAGATTTCAGCATGTGTCTTCTGGACATGTAAATAGTGAACAGAGATCTCAACATTCAAGTCAGCATCATGCTGCGGCACCGTCAGCTACCGAATCCGTGTTGGAGAGGCAAAACACAGATGATTCTGCAAGGAATGTAGGATCCTTATCAACTCCCAGCACAAGACCAGAACCATCTAATTCTCGTGTTGTAAATATAAATATTCTGGCTGCTAGTGGACCCCAAAACAACCAAGAACCTGAGCGACAAATACCAAGCAGTGTACTTCAGTTATTAAGGTCACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAAGTGTACAAGGAATAACTGCAGGTTCTACCTCAGATCATGCTGCAACATCAAGGGGTGCTGCCCAAGTCCCTGAGGCTCAGCCTAATGTCAGTGACGAAGGAATATTTTTGTCTAATGTGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTTGAAACTGATGTTGGAACATCGCGCAGACAGGGTGATTCTGACTCAAGCCCCCCAAATCCAAAACGTCAAAAGGTACATGAATCAAAGGATGCCGGTTTGTTTCTGTTGTAAACAATTCTTTAATTCTTTAAAGAGGCCATTTTAA 2172 0.4443 MGSNGTEKIPINNSAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSLPNHSVTEPNSSSSLSSLSHSSQVAPGVFIETFNVPFQGDGVAPDINRIVSAVLGSIGLQNFASGEGIDVREHDSQGPGRSGSSGIFDSSQPQPEQSGFRILSDRSRNTFGAPAPVSLGSLQPPVIPDSLTTLSQYLSHISHEFDAIVREGGDIAQAAEAQRNVETRSVSSRSGSTPEGFSSPTFLAEVLLSTRRMIVEQAGECLLQLSRQLESQADVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGTSFGAVPVGAAQSNSSLGSGLGSSFFPRRIDIQIRRGTSSTTSNTNQEERNDTQTASVQRNPGEIPVNQATSRRPDASFAGEAGVRLVPIRTMVAAAVPGPVVRPPSESSGNSIGLYYPILGRFQHVSSGHVNSEQRSQHSSQHHAAAPSATESVLERQNTDDSARNVGSLSTPSTRPEPSNSRVVNINILAASGPQNNQEPERQIPSSVLQLLRSLFPGGEIHVEDSSVQGITAGSTSDHAATSRGAAQVPEAQPNVSDEGIFLSNVLREIMPVISQQVGLKLMLEHRADRVILTQAPQIQNVKRYMNQRMPVCFCCKQFFNSLKRPF* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00765 723 MobiDBLite consensus disorder prediction 179 206 - -
Lapu3g00765 723 SUPERFAMILY Ubiquitin-like 17 102 IPR029071 -
Lapu3g00765 723 MobiDBLite consensus disorder prediction 94 121 - -
Lapu3g00765 723 MobiDBLite consensus disorder prediction 524 577 - -
Lapu3g00765 723 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Lapu3g00765 723 Gene3D - 14 107 - -
Lapu3g00765 723 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 10 693 - -
Lapu3g00765 723 SMART ubq_7 22 93 IPR000626 GO:0005515
Lapu3g00765 723 MobiDBLite consensus disorder prediction 171 209 - -
Lapu3g00765 723 MobiDBLite consensus disorder prediction 262 282 - -
Lapu3g00765 723 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Lapu3g00765 723 PRINTS Ubiquitin signature 74 95 IPR019956 -
Lapu3g00765 723 PRINTS Ubiquitin signature 53 73 IPR019956 -
Lapu3g00765 723 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lapu3g00765 723 MobiDBLite consensus disorder prediction 627 649 - -
Lapu3g00765 723 MobiDBLite consensus disorder prediction 429 469 - -
Lapu3g00765 723 MobiDBLite consensus disorder prediction 106 121 - -
Lapu3g00765 723 MobiDBLite consensus disorder prediction 429 472 - -
Lapu3g00765 723 MobiDBLite consensus disorder prediction 263 282 - -
Lapu3g00765 723 FunFam Large proline-rich protein BAG6 14 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00765 Lapu-Chr3 8055650 8069099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00765 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 8.33e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00765 K23390 - gmx:100783070 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00765 3 8055650 8069099 Lapu3g00765 3 8055650 8069099 ECH