Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00763 ATGTGTGTGCAAGAGGGTGAACAAGTTGGTGAGGATATAGAGAAGAACGTTGATAACAGAAGGGTATCATGGCCTTTGCATTGTGATCTCTTGCATGCCCACATGGACAACAGGGAAAAAGACTCTTCCTTAAGAACTCCCACTGACCAGATCAGTGTTGCGAATTCATTTCCTTTGGAAAGCATATGTGAGGATACAGAAATTGTTGACAAAAAACAGAACCTGATGAACTTTGTCCCTACTCTTCGGTCTGGAGAGTGGTGTCATATTGGAGAGCGCCCTTCCATGGAGGATACCCACATATGCATTGGAGACTTGGCCCAAAAATTTGGCAATAACGTACTTTGCGAGGAAGCTATTTCCTTTTATGGTGTATTTGACGGACACGGTGGGAAGAGCGCTGCACAATTCGTTCGTGATCATCTACCGCGGGTGATTGTTAAGGATGCTGACTTTCCCTTGGAACTTGAGAAGGTTGTCACAAGGTCATTTTTGGAGACTGATGCAGAGTTTGCAAGATCATGTTCTACTGAGTCTTCCCTGTCTTCTGGTACAACTGCACTCACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGACTGCCGTGCGGTGTTATCCCGTGGTGGAAGGGCCATAGAAATGTCGAAAGATCACAGGCCGTTCTGCGTTAAAGAAAGGATGAGGATTGAGTCTGTGGGAGGATACATAGATGATGGTTACCTGAATGGGCAGTTAGGTGTGACTCGCGCTCTAGGTGACTGGCATCTTGAAGGAATGAAGGAAATGAATGGAAAGGATGGACCATTGAGTGCTGAGCCTGAACTAAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGGCAGTGATGGGATCTGGGATGTTTTTCGCAGCCAGAACGCGGTGGACTTTGCTCGAAGGAGGCTTCAAGAACACAATGATGTGAAGCAGTGTTGCAAGGAGATAATAGGAGAAGCAATAAAGAGACAAGCAACAGATAACTTGACAGTGGTGATGATATGTTTTCACTCAGAACCACCACCTCCTGTGCTAGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAAAATCTTAAATGCTTGCTAGAAGGATAG 1146 0.4476 MCVQEGEQVGEDIEKNVDNRRVSWPLHCDLLHAHMDNREKDSSLRTPTDQISVANSFPLESICEDTEIVDKKQNLMNFVPTLRSGEWCHIGERPSMEDTHICIGDLAQKFGNNVLCEEAISFYGVFDGHGGKSAAQFVRDHLPRVIVKDADFPLELEKVVTRSFLETDAEFARSCSTESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGRAIEMSKDHRPFCVKERMRIESVGGYIDDGYLNGQLGVTRALGDWHLEGMKEMNGKDGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAIKRQATDNLTVVMICFHSEPPPPVLVERPRVRRSISAEGLQNLKCLLEG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00763 381 Pfam Protein phosphatase 2C 93 340 IPR001932 -
Lapu3g00763 381 SUPERFAMILY PP2C-like 74 350 IPR036457 -
Lapu3g00763 381 PANTHER PROTEIN PHOSPHATASE 2C 71 346 IPR015655 GO:0004722|GO:0006470
Lapu3g00763 381 Gene3D - 65 352 IPR036457 -
Lapu3g00763 381 SMART PP2C_4 73 346 IPR001932 -
Lapu3g00763 381 CDD PP2Cc 83 348 IPR001932 -
Lapu3g00763 381 FunFam Probable protein phosphatase 2C 22 66 351 - -
Lapu3g00763 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
Lapu3g00763 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00763 Lapu-Chr3 8042053 8045567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00763 42 381 PP2C-type Phosphatase Gene Family AT2G25620 56.977 2.41e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Lapu3g00763 PP2C 7.8e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00763 K14803 - gmx:100782648 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00763 3 8042053 8045567 Lapu3g00763 3 8042053 8045567 ECH
Lapu3g00763 3 8042053 8045567 Lapu9g00255 9 2471764 2475336 PCT