Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00761 ATGGGTTCCTCCTCTAGTAGACTTGCCTCTCGCCCTTCTGCTTCTTCTACTTCTTCTACTCATAGGGTCAACCGCTTCAGATTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTGATTTAGCAAGAAATTTTGACGGTGAAATTCATAAAGCCACTGAGGAATCATCTTTATCATGTACAGAAGGTAGAATTAGCTGCAGTCCCCCTGCTGAAACTTCGACCTCGTCTGATATGAGAACCGAGTTCCATGGGAATACTAGTGCTGGAAGTTCTTATAGAAACGTTGCAACACATAGTGAGAGGAACTGCTTTTCTGAACATGAGGAGCAAGCCCCTCCTTGTCAGGTAAGTGCTGGTCATAGTGGTCGTGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGCAAATCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTGGTTAATGACGTTAATAATCCAGTGGTTAGTGGTGTCTCTCAAGTCTCTCAAGTCTCTCATGAGACAGTGCATCCGAGAAGTTCAACCCCTCAAGAGCATGTGAATTTCAGTTCTGGGGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAGAATTCTTCCATCCCTATTGCTCAAGGTTCCAACTTAGCAGCAACTTCTCAAGAGCCAGAAGAAGAACCTTGTCGCGACACAATACCTTCAGGTTTAGGTATTCTTGTATCCAATCGGGAAAGAGGTCCGGGAAATGATAGCGTGCTTCAAGTTGACGTGGTCACAATATCTTCCAACATTTTGTCTGGAAGCAATGCTGATGCCAATGATCATGATGCCAGAAGGAGTGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCCACCGGAGGTACTGATGATCCTGGATCTCAAGATCAATGGCTAGTTGATTTTGGTGGTGATTTGTCAAATGATGCTGTTGGAGGTGCTTCTGCATATATGGGCAGTAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGATCTGGGATAGGCTTCGTGGTGGCTTTGATGAGATTGGTCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAATCAAGCACTCGAGCAAGTATTTCAAGAATAGTCATGTTGGCTGAGGCTTTGTTTGAGGTTTTGGATGAAATCCATCGGCAACCTGGATCACTGTCTCTATCCATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTCCCTCTGAAATCTCACAAAAAGGTTGATGTGGCTGATGGAGGCAATGATGCTGAACAATGTTACATATGCCTGGCGGAGTACGAAGAAGGGGACCAAATTCGAGTTCTTCCTTGCCTCCATGAGTATCACATGTCATGTGTGGACAAGTGGCTTAAAGAAATACACGGTGTATGTCCTCTGTGTCGTGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCAACTCAGAAGTGCAATCTCATTGA 1638 0.4451 MGSSSSRLASRPSASSTSSTHRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVDLARNFDGEIHKATEESSLSCTEGRISCSPPAETSTSSDMRTEFHGNTSAGSSYRNVATHSERNCFSEHEEQAPPCQVSAGHSGRESYSDSSNTASTSFVANQSSDPVSVNVSANKDVVNDVNNPVVSGVSQVSQVSHETVHPRSSTPQEHVNFSSGEISVENHTSAFISIQNSSIPIAQGSNLAATSQEPEEEPCRDTIPSGLGILVSNRERGPGNDSVLQVDVVTISSNILSGSNADANDHDARRSGRRLFWDAFSRRSSRRLGDSPTIVFSTGGTDDPGSQDQWLVDFGGDLSNDAVGGASAYMGSRIHRLNERRMRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVDVADGGNDAEQCYICLAEYEEGDQIRVLPCLHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSANSEVQSH* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00761 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 530 IPR013083 -
Lapu3g00761 545 ProSiteProfiles Zinc finger RING-type profile. 484 526 IPR001841 -
Lapu3g00761 545 SUPERFAMILY RING/U-box 470 529 - -
Lapu3g00761 545 FunFam Putative RING zinc finger domain superfamily protein 451 531 - -
Lapu3g00761 545 MobiDBLite consensus disorder prediction 1 22 - -
Lapu3g00761 545 SMART ring_2 484 525 IPR001841 -
Lapu3g00761 545 MobiDBLite consensus disorder prediction 67 161 - -
Lapu3g00761 545 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 544 - -
Lapu3g00761 545 MobiDBLite consensus disorder prediction 72 114 - -
Lapu3g00761 545 MobiDBLite consensus disorder prediction 235 256 - -
Lapu3g00761 545 MobiDBLite consensus disorder prediction 135 161 - -
Lapu3g00761 545 Pfam Ring finger domain 483 526 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00761 Lapu-Chr3 8027119 8030973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00761 359 530 C3H Transcription Factor Family AT5G45290 47.396 1.42e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00761 - - gmx:100783604 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00761 3 8027119 8030973 Lapu3g00761 3 8027119 8030973 ECH