Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00748 ATGCCGGACGGAGAGTCCTCCGTGGTCGCCGGCGACCAACCGTCCATGGACCCCTCTTCAAGCCTCTCCGATCAACCACTGTCCCTCAGTCTCTCTCAAGTTAAACTTCTTGATGACTCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTATATTTGGGGACAGGGTGTGGGAAGACTCACATAGCTGTGCTTCTTATGCATGAGATGGGTCATTTGATTCGGAAACCGCAGAAGAACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGCAGACTCTACTGATTTTAAGGTTGGAATCTTCTGTGGAAGTTCAAAGCGCTTGAAATGTCATCAAGACTGGGAGCAAGAGCTTGGACAATATGAGGTTCTTGTTATGACGCCACAAATATTAGTTCACAACTTGTCTCATTGTTTCATCATGATGGAAATGATTGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATTATGAAAATTTTCTACAAAAGTAATTCCACGAAGGTTCCTCGCATATTTGGCATGACCGCTTCCCCTGTTGTAGGAAAAGGCGCTTCTAGTGAAGCAAATCTAGCAAAAAGCATCAATAGTCTTGAACATATGCTTGATGCCAAGGTTTACTCTGTTGAAGACAAGGAATTGAAATCTTTTGTGACCACTCCTGTTATTAATATATGTCATTATGCTTCAACTGCAAGTGGGGAAAGTAGCTTGTACTTGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAACCCTTGGTAGGAGCACAGAAGATCACCAGAAACGAATGAATACAAAGAAACTTATGAACCGAATACATGATAATGTGGTTTTCTGTCTACAGAAACTTGGCATTTGGGGAGCGCTGCAAGCTAGTCATATTCTTCTGAGTGGTGATCATTCTGAGAGGCATGAATTAGTGGAGGCTGAAGGAAATTCAAGTGATGACTCTTTGTGTGACAAATATCTTTCTCAGGCTGCTGAACTATTTACTTCGCAGTGCATTATAGGCAGCAATGTATCTGATGATTTATCTTCTGCGGAAATATTGAAAGAGCCATTTTTCTCCGCTAAGCTTTTGCGACTCTTTCGGATACTGTCGAACTTTAGGTTGCAAAAGAACATGAAATGTATTATTTTTGTGAATAGAATTGTGACTGCAAGGTCCCTGTCATACATACTTCAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTATCTAGTAGGAGTACATTCTGGGCTGAAGAGTATGTCACGAAAGACCATGAACATCATTGTTGATAAGTTTCGCTCTGGAGAGTTGAATTTGTTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAAACATGTTGCCTTGTGATACGATTTGATCTTCCTGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCTCGTATGCCTCAGTCTGAATATGCTTTTTTGGTGGACAGTGATAATAAGAAGGAGCTTGACATAATTGGTGGTTTTGAGAATGATGAAGAACGAATGAATATGGAAATTACTTTTCGAACATCTAATGAGACATACATCGTCCCTGAGGAAAGAGTTTTCAGAGTTGATTCATCTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTATTTTGATCCCAAGCCAAATTTTTATTTCTTAGATGATTCAGGGGGAATTGTTTGCCACATAAGATTGCCTTCCAATGCACCAATACACCAAATTTTGGGTGCACCACAGTTGTCTATGGAGGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTGTATAAATTAGGCGCTTTAAGTGATTGTCTCTTGCCAAAGCAAGATGATGCGGAGTCGGGAGAACAGGTTTCTGGCTCTACTGATGAAGATGAATGTGAAGATGCCATCTCAAGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCTTTGGAAAGTCATGGATAAGCGAGGATAAAATCATCCATCTCAACTCGTACTACATAAAATTTTGTCCATTTCCAGAGGATAGGGTCTACAAGGAGTTTGGTCTTTTCATCATGGCCCGTCTTCCAATGGAGGCTGAGAAATTGGAACTTGATCTTCATCTTGCTCATGGACGATCTGTGATGACAAAATTTGTCCCATTTGGAGTTGCAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTGGATAGATTTGAATTTGTTTCTGAGATTGTAGACTTGGGTTTGGCTGCTGAATCTCACACAAGCTCATCGACCTTCTACCTTTTGCTTCCAGTCGTATTGCAAGAATATGGAAATGCCATGAAAGTAGATTGGAAGACAGTGAAGAGATGCCTTTCCTCACCAATTTTCAGGCGTCCAGAATATACTATGGATAAAAAGTTTCCTTTTGACATTCACCTGCAACTTGCCAATGATTACAGAAGTGTAAGAGATGTCGAGAATAGTTTAGTGTATGCCCAACATAGAAAGACCTTTTATTTTGTCACAAATATTGATTATGAAAAGACTGGATTTAGTCCTCATAAAGAATCGGGCACTTCAAGCTATGTGGATGGCTTAATTGAAAAGTTTTCCATTCACCTCAAACGCCCAGAACAACCACTTCTGCATGTAAAACCACTCTCCAATTTGCACAACTTGCTACACAACCGAAAGCGTGAGGATGCAGAACCACAGGAACTGGATGAATATTTAATTTATTTGCCTCCTGAGCTATGTGAATTGAAAATAATTGGCTTTTCAAAGGATATTGGCAGTTCCATATCTTTGCTACCCTCCATTATGCATCGTCTTGGAAACTTGCTGGTGGCCATTGAACTAAAGCACACACTATCTTTCTCTTTTCCAGAGGCAGCTGAAGTTAGTGCCCTTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGTCTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGTTGTTGCACGCCATCTTTTTCTCATGCATGACAACCTTCATGAAGGAGACCTAACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTAAAGTTGGCCATTAGGCACAATTTACAGGTCTATATATGCGATCAGACATTTGATCCCTCTCAATTTTATGCATTCGGCCGTCCTTGCCCAAGAATTTGTTGTAAAGAAACCGAAGAAAGCATTCACTTTTGTGTAAATTCTGTTAAGGAACAAGGAAAAGTAACTGAAACCCGATGTAACAAAAATCATCACTGGTTACATAAGAAAACAGTTGCTGATGTGGTGGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGCGGCTTTAAAGCTGCAATTGCCTTTCTTACTTGGATTGGCATACAAGTTGATTTTGAAGCCTCACAAGTGGTTGATATTTGCGTAGCAAGTGCTGGCTATTTCCCTCTTTCTTCTGATGTAGACATTCCTTCTCTTGAAAGAAAACTAGGACATGAATTTTTTCATAAGGGTCTGCTTCTCCAGGCATTTGTGCATCCCTCTTACAATAAGCTTGGAGGAGGGTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTGCTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAACAAGGCATTTGCCTGTGTAGCAGTAGATCGCAGTTTTGATAAATATCTTTTATGTGATTCCAATGGCCTGTCCGAGGCAATAAAAAAATATGCGGACTACATTAGAGGATCTTCCGCAGATAGTGGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACTTGGTGGAATCTTGTGTTGGTGCCATCCTTCTAGATTCTGGGTTCGATTTGAATAAAGTTTGGAAAATTATGACTTCATTCTTGAAACCAATCATGAAATTCTCATCAAGCTTGCAGCTGAGCCCTATTAGGGATTTGCGAGAACTTTGCCAAGCTCATAATTTGGAGTTGGAGTTTCTGCCAGTGCCATCAAAACTGACTAAAACCTTTTCAGTTGAAGCCAAAGTGAGTGGGAATAATGTATATGAAACAGCTTCAGCAACTGGCCAAAATAAAAAGGAGGCTTGCAGAATTGCTTCATTGATACTTTTTTCAAAGTTCAAGGCTCAAGGCTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAGATGAAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACCAATACTGCTAAGCATATAATGGTAACTGCAGACTTGTACAGCAAGTCAAACCCAGAAATTCGACCTATTCAATATACAGCTGAAGTATGTTCTCCATGTGTGAAACCTGTTGGTCAATGGCTTCAATCTTCTGCTAAGGAAAAGCTCAGTGAAGTATTTGAAAATCATTGTAGCAGTGACTCATCAGGGGCAGGAACGGCAAGATCACGACTGTATGAATTATGTGCTGCTTTTTGCTGGAAACCTCCTACATTTGAATGCTGCAAAGAAGAGGGACCACATCACCTCAAACAATTCACTTTTAAGGTGACCTTGGACATAGAAGAGGCCCCTGATACGATTTTAGAGTTTGTTGGGGAACCTCGGTCAAAAAAGAAAGATGCAGCAGAGAGTGCAGCTGAGGGTGCATTTTGGTACCTGCAACAGGAAGGCTACTTGCCTAGTGGTAGTTGA 4908 0.4042 MPDGESSVVAGDQPSMDPSSSLSDQPLSLSLSQVKLLDDSVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNICVFLAPTVALVHQQAKVIADSTDFKVGIFCGSSKRLKCHQDWEQELGQYEVLVMTPQILVHNLSHCFIMMEMIALLIFDECHHAQVKSNHAYAVIMKIFYKSNSTKVPRIFGMTASPVVGKGASSEANLAKSINSLEHMLDAKVYSVEDKELKSFVTTPVINICHYASTASGESSLYLKIEEIKRQCIATLGRSTEDHQKRMNTKKLMNRIHDNVVFCLQKLGIWGALQASHILLSGDHSERHELVEAEGNSSDDSLCDKYLSQAAELFTSQCIIGSNVSDDLSSAEILKEPFFSAKLLRLFRILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDYLVGVHSGLKSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSDNKKELDIIGGFENDEERMNMEITFRTSNETYIVPEERVFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFYFLDDSGGIVCHIRLPSNAPIHQILGAPQLSMEASKRDACLKAIEELYKLGALSDCLLPKQDDAESGEQVSGSTDEDECEDAISRGELHEMLVPSAFGKSWISEDKIIHLNSYYIKFCPFPEDRVYKEFGLFIMARLPMEAEKLELDLHLAHGRSVMTKFVPFGVAEFDKDEIKMAENFQEMFLKIILDRFEFVSEIVDLGLAAESHTSSSTFYLLLPVVLQEYGNAMKVDWKTVKRCLSSPIFRRPEYTMDKKFPFDIHLQLANDYRSVRDVENSLVYAQHRKTFYFVTNIDYEKTGFSPHKESGTSSYVDGLIEKFSIHLKRPEQPLLHVKPLSNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKHTLSFSFPEAAEVSALRVLEALTTEKCQERLSLERLEVLGDAFLKFVVARHLFLMHDNLHEGDLTKRRSNAVNNSNLLKLAIRHNLQVYICDQTFDPSQFYAFGRPCPRICCKETEESIHFCVNSVKEQGKVTETRCNKNHHWLHKKTVADVVEALVGAFLVDSGFKAAIAFLTWIGIQVDFEASQVVDICVASAGYFPLSSDVDIPSLERKLGHEFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLIASYLFSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKYLLCDSNGLSEAIKKYADYIRGSSADSGIKEGPKCPKALGDLVESCVGAILLDSGFDLNKVWKIMTSFLKPIMKFSSSLQLSPIRDLRELCQAHNLELEFLPVPSKLTKTFSVEAKVSGNNVYETASATGQNKKEACRIASLILFSKFKAQGWKAKSKTLEEVLESTSKMKPKLIGYDETPIDVTDTNTAKHIMVTADLYSKSNPEIRPIQYTAEVCSPCVKPVGQWLQSSAKEKLSEVFENHCSSDSSGAGTARSRLYELCAAFCWKPPTFECCKEEGPHHLKQFTFKVTLDIEEAPDTILEFVGEPRSKKKDAAESAAEGAFWYLQQEGYLPSGS* 1636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00748 1635 Pfam Ribonuclease III domain 1244 1353 IPR000999 GO:0004525|GO:0006396
Lapu3g00748 1635 Pfam Ribonuclease III domain 1037 1168 IPR000999 GO:0004525|GO:0006396
Lapu3g00748 1635 CDD RIBOc 1022 1178 IPR000999 GO:0004525|GO:0006396
Lapu3g00748 1635 Gene3D Ribonuclease III domain 1207 1377 IPR036389 GO:0004525|GO:0006396
Lapu3g00748 1635 SUPERFAMILY RNase III domain-like 1021 1182 IPR036389 GO:0004525|GO:0006396
Lapu3g00748 1635 CDD RIBOc 1225 1375 IPR000999 GO:0004525|GO:0006396
Lapu3g00748 1635 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Lapu3g00748 1635 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1380 1448 IPR014720 -
Lapu3g00748 1635 Gene3D - 1378 1457 - -
Lapu3g00748 1635 ProSiteProfiles PAZ domain profile. 872 972 IPR003100 GO:0005515
Lapu3g00748 1635 Gene3D paz domain 865 970 - -
Lapu3g00748 1635 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
Lapu3g00748 1635 CDD DSRM_EIF2AK2-like 1379 1446 - -
Lapu3g00748 1635 Pfam Dicer dimerisation domain 578 663 - -
Lapu3g00748 1635 Gene3D Dicer dimerisation domain 574 669 IPR038248 -
Lapu3g00748 1635 FunFam Endoribonuclease dicer-like 1 385 548 - -
Lapu3g00748 1635 PANTHER DICER-RELATED 62 1451 - -
Lapu3g00748 1635 Pfam Helicase conserved C-terminal domain 400 512 IPR001650 -
Lapu3g00748 1635 ProSiteProfiles Ribonuclease III family domain profile. 1209 1353 IPR000999 GO:0004525|GO:0006396
Lapu3g00748 1635 Gene3D - 1558 1627 - -
Lapu3g00748 1635 Gene3D - 387 548 IPR027417 -
Lapu3g00748 1635 SUPERFAMILY dsRNA-binding domain-like 1552 1632 - -
Lapu3g00748 1635 Pfam PAZ domain 871 993 IPR003100 GO:0005515
Lapu3g00748 1635 SUPERFAMILY dsRNA-binding domain-like 1335 1446 - -
Lapu3g00748 1635 Gene3D - 47 284 IPR027417 -
Lapu3g00748 1635 SMART helicmild6 424 514 IPR001650 -
Lapu3g00748 1635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Lapu3g00748 1635 FunFam Endoribonuclease dicer-like 1 1203 1374 - -
Lapu3g00748 1635 SMART PAZ_2_a_3 851 998 IPR003100 GO:0005515
Lapu3g00748 1635 SMART ultradead3 45 250 IPR014001 -
Lapu3g00748 1635 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1552 1626 - -
Lapu3g00748 1635 SUPERFAMILY RNase III domain-like 1208 1372 IPR036389 GO:0004525|GO:0006396
Lapu3g00748 1635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 555 IPR001650 -
Lapu3g00748 1635 SMART riboneu5 1224 1376 IPR000999 GO:0004525|GO:0006396
Lapu3g00748 1635 SMART riboneu5 1021 1188 IPR000999 GO:0004525|GO:0006396
Lapu3g00748 1635 ProSiteProfiles Ribonuclease III family domain profile. 997 1168 IPR000999 GO:0004525|GO:0006396
Lapu3g00748 1635 MobiDBLite consensus disorder prediction 1 26 - -
Lapu3g00748 1635 ProSitePatterns Ribonuclease III family signature. 1244 1252 IPR000999 GO:0004525|GO:0006396
Lapu3g00748 1635 FunFam Endoribonuclease dicer-like protein 44 283 - -
Lapu3g00748 1635 Gene3D Ribonuclease III domain 1010 1179 IPR036389 GO:0004525|GO:0006396
Lapu3g00748 1635 FunFam Endoribonuclease dicer-like 1 573 669 - -
Lapu3g00748 1635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 528 IPR027417 -
Lapu3g00748 1635 SMART DRBM_3 1381 1447 IPR014720 -
Lapu3g00748 1635 SMART DRBM_3 1552 1626 IPR014720 -
Lapu3g00748 1635 CDD DSRM_DCL_plant 1558 1627 - -
Lapu3g00748 1635 MobiDBLite consensus disorder prediction 12 26 - -
Lapu3g00748 1635 CDD DEXHc_dicer 47 246 - -
Lapu3g00748 1635 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1551 1627 IPR014720 -
Lapu3g00748 1635 SUPERFAMILY PAZ domain 871 970 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00748 Lapu-Chr3 7876026 7910593 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00748 412 532 Eukaryotic Initiation Factors Gene Family AT1G72730 30.645 1.08e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00748 K11592 - gmx:100818702 2867.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00748 3 7876026 7910593 Lapu3g00748 3 7876026 7910593 ECH