Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00746 ATGGCGCAACAGAAACTCACCGATTACGAGCTCAAGCGACTCGAGAACATTCGCCGCAACGATGAAATGATGGCAGCCCTTAAACTCCATTCCAAAGCCACCCAACTCTCCAATTTCAAGCGTCAAAGAGTTGAAACCAAATCCTACCGCGTGAAATCGGAAAAGAAACCGAAAACCGAAACCCCAATCGTCATCAGAGTCAGACGCTCCCTGCGAACCAGGGGTATTCCACCAGATTGCGAAGGTCTTGACGGAGATTCCGTGGGCCCCACGACTCCCACCAAAGAAGAGCCACCTTCCGTCGTAAGTTTGGGTCCTCTTTCCATGGCCAATGCTCGTGAAAGCGCTCACTCTGATAGTTCCTTGATTGAATCGCTAATGGGTATGGCCCAAGATGACAGTGTTCAAAAAGGGAAAGTGGGGGATTCCCCTGATTTGGAATCTCTTTGTTTGGATCCCGAGAATATTGCACGGGTTGTCTCTGGAAGGATTACCAACGTCACTTTTTTCCCTTCCAGTAGTGTCAAAATGATTGCCGCGGGTAACAAGTTTGGGAATATTGGGTTTTGGAATGTGGGAGAAAGTGAGGTTCATTTATACCGTCCCCATAAGGCTCCCATTTCTGGGATCTTGATTCAACCACATTGTTATTCCAAGATATACACAAGTTGTTATGATGGAGTTCTTCGGCTAATGGATGCTGAGAAGGAAATATTTGATCTGGTGTTTGAGAGTGATGAAAGTATATATGCTCTTTCACAACCAACAAATGAGACAAACTGCCTATATCTTGCCGAGGGTTCTGGAGGTTTGACTATTTGGGATAACAGAGTGGGAAAACGTTCGTCGCACTGGGATTTGCATGACAGTAGGATTAACACGATAGATTTCAACCGTCAAAACCCGCATATTGTAGCTACTAGTTCCTCTGATGCAACTGCCTGCACCTGGGATTTGAGATATACTAATAGTGATAAGCTCACAGCCTTGAGGACATTTACCCACAAAAGGTCTGTCCAATCTGCTTACTTCTCTCCTTCTGGAGGTAGCCTTGCAACTACAAGCTTGGACAACACTATCGGTATTTACAGTGGAATTAACTTGGAGGATGCGTCTATTATTTCTCATTTCAATCAGACTGGTAGATGGCTTTCTACATTCAGAGCGAAATGGGGTTGGGATGACAAATTTCTCTTCGTTGGAAATATGAATAGATGGGTTGATGTGGTCTCAGCAGTTCAAAGGAAAATAGTTATGACTCTAGAGAGCCCACACATGTCTGCCATTCCTTGCAGATTCGATATAAACTCTTACGAGGTTGGGATGCTTGTAGGAGCTACAAGTGGAGGCCAGGTTTATGTCTGGACATCACGCTAG 1377 0.451 MAQQKLTDYELKRLENIRRNDEMMAALKLHSKATQLSNFKRQRVETKSYRVKSEKKPKTETPIVIRVRRSLRTRGIPPDCEGLDGDSVGPTTPTKEEPPSVVSLGPLSMANARESAHSDSSLIESLMGMAQDDSVQKGKVGDSPDLESLCLDPENIARVVSGRITNVTFFPSSSVKMIAAGNKFGNIGFWNVGESEVHLYRPHKAPISGILIQPHCYSKIYTSCYDGVLRLMDAEKEIFDLVFESDESIYALSQPTNETNCLYLAEGSGGLTIWDNRVGKRSSHWDLHDSRINTIDFNRQNPHIVATSSSDATACTWDLRYTNSDKLTALRTFTHKRSVQSAYFSPSGGSLATTSLDNTIGIYSGINLEDASIISHFNQTGRWLSTFRAKWGWDDKFLFVGNMNRWVDVVSAVQRKIVMTLESPHMSAIPCRFDINSYEVGMLVGATSGGQVYVWTSR* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00746 458 ProSitePatterns Trp-Asp (WD) repeats signature. 305 319 IPR019775 -
Lapu3g00746 458 MobiDBLite consensus disorder prediction 74 102 - -
Lapu3g00746 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 320 IPR001680 GO:0005515
Lapu3g00746 458 PANTHER UNCHARACTERIZED 4 457 - -
Lapu3g00746 458 SMART WD40_4 326 364 IPR001680 GO:0005515
Lapu3g00746 458 SMART WD40_4 278 318 IPR001680 GO:0005515
Lapu3g00746 458 SMART WD40_4 193 233 IPR001680 GO:0005515
Lapu3g00746 458 FunFam WD repeat-containing protein 76 155 457 - -
Lapu3g00746 458 Gene3D - 155 458 IPR015943 GO:0005515
Lapu3g00746 458 SUPERFAMILY WD40 repeat-like 159 455 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00746 161 405 U-box Gene Family AT1G04510 23.166 1.29e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00746 K24755 - gmx:100800122 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00746 3 7862009 7864908 Lapu3g00746 3 7862009 7864908 ECH