LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g00742	ATGCCTTCTAATCTCATCGTTTTCTTCACTCTCTTTCTCACCTTCACCCCTTTCAAATCTCACTCCTTTGCAGATAACCCTTCCTGGGTGAAAGCCGGTTATTACTACTCTGGCAATGAAATTTCTGCTTCAGACATCAAAGCCACGCTTTTTACTCACCTCTTATGCGCTTTTGCCTTCATAAATCCCACCACCTACAACATATTCATCAACTCTTCGGAGGAGCACAAGTTCTCCACCTTCACCAACTCCGTGAAGCTCCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGGTGGCAGGGAGGACTCTTCAGTCTTCTCCTCTATGCTAAATCAATCTTCTTACAGGAAGCTTTTCATTGATTCTTCGATTAGGACAGCAAGGTTATATGGCTTTCATGGCATAGACCTTACTGGGGCGTGGCCAAGCTCCGAAGTTACCAATTTTGGAACCTTTTTGAAGGAGTGGCGTGCTGCAATAACTTCTGAAGCAAGAAACTCTACCAAGCCAGAGCTGTTGTTGGTAATGGCAGGTTACTACCTTAAGGCTTCGGACTCCTTGAGTTACCCCTTTGATTCAATGCAGGAGAATCTGGATTGGGTGCACTTTGTGGCTTATGATTACTATCTCCCTAGGAGGGCCAATGTCACGGCTTTTCATGCGGCTTTGTATGGTTCATCTGATTGGGATAACACTGATTCTGGCATCAGAGAGTGGAGGAGGAGGGGGTTTTCGTCTAAGAAGCTGTTAATTGGATTGCCTTATCATGGATATGCGTGGACACTTGTGACTCCTGCAGCAAACAGTGGCGTGGGAACACCAGCTTCGGGACCTGCCATTACAATGGATGGTTCCATGGGTTATAAGTTCATAAAGAGTTACATTAAAAGCTTTGGAAATGGAGTTGTTCCACATTACAATGAAAGTTTTGTGGTGAGCCAGTTCACTGTTGCGTCCACCACTTGGGTTAATTTTGATGATGTGGAGGTCATCAGGGCCAAAGTTTCTTATGCAAAGAAAAATGGACTACTCGGTTACAACGTGTTCCAAATAGGCAATGACGAAAATTGGGAACTTTCAAGAGGGGCAGCTCAATCAGTAGATGAAGAAATTGAAGATCATCACAAGAGGAGTTTGGTGATAATTGTTGTGCTTGCTACTCTGACTTTGGCGCTTCTGTTGGGAATAGTATTTTGCTACTACTACCGAGAAAAGGATATCGATGCAAACGGTTCTGATTTGACAGTATTCAGTTATCTCACAATTAAAGTGGCAACAAATAACTTCTCAAAAGACAATAGGCTTGGAGAGGGTGGATTTGGCACAGTGTACAAGGGCAAACTACGGAAGGGTCAGGAAATAGCTGTGAAAAGACTCTCAGAAACCTCAAATCAAGGCCCTGAAGAGTTCAAGAATGAAATCACACTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTCTGGGTTACTGCACAAAAAGGGATGAGAAGATTCTGATCTATGAATACCTGCCAAACAAAAGCTTAGATAATTTCCTCTTTGATGCAACGAAATCATATCTTTTAGACTGGAACAAGCGTGTCAATATCATTGAAGGCGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATCATTCACCGAGATCTTAAAGCTAGTAATGTTTTACTAGATGAAGATATGAATCCAAAAATATCTGATTTTGGTATGGCTAGAATTTTCAGAAAATACGACCTTGAAGCAAATACAGACAGGATAGTTGGAACATATGGGTATGTACCTCCTGAGTACGTGAGAAAAGGCATATACTCAACGAAGTACGATGTTTATAGTTTTGGAGTTCTTCTCCTGCAAATCATAAGCGGAAAGAGGACTTCATGTTATTATGGAATGCATGAAAATATGACCCTTTTGGAATATGCATATGAGCTGTGGATGGAAGGAAGAGGTGTGGAGTTTGTTGACCCTTCATTGGATGATACAGCATCTCCTTGTAAAATCATGAGATGCATGCAGGTAGCTCTGCTTTGCGTTCAAGAGAACTCCTCGGATAGACCTTCCATGTTGGAAGTTGATTCACTACTGAAGAATGAAGGTGCAGTTATTGGTACTCCCAAAATGCCTGCGTTTTCAGTTCAGAAACGTGGAGATGAGGAAGAAACATCTCGCAGCGGAATCAAATTTTATTCAATCAATGATGTTACAATTTCTCAACTGGCACCAAGATAA	2250	0.4173	MPSNLIVFFTLFLTFTPFKSHSFADNPSWVKAGYYYSGNEISASDIKATLFTHLLCAFAFINPTTYNIFINSSEEHKFSTFTNSVKLQNPSVSTLLSIWGGREDSSVFSSMLNQSSYRKLFIDSSIRTARLYGFHGIDLTGAWPSSEVTNFGTFLKEWRAAITSEARNSTKPELLLVMAGYYLKASDSLSYPFDSMQENLDWVHFVAYDYYLPRRANVTAFHAALYGSSDWDNTDSGIREWRRRGFSSKKLLIGLPYHGYAWTLVTPAANSGVGTPASGPAITMDGSMGYKFIKSYIKSFGNGVVPHYNESFVVSQFTVASTTWVNFDDVEVIRAKVSYAKKNGLLGYNVFQIGNDENWELSRGAAQSVDEEIEDHHKRSLVIIVVLATLTLALLLGIVFCYYYREKDIDANGSDLTVFSYLTIKVATNNFSKDNRLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGPEEFKNEITLTARLQHVNLVRLLGYCTKRDEKILIYEYLPNKSLDNFLFDATKSYLLDWNKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDEDMNPKISDFGMARIFRKYDLEANTDRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGMHENMTLLEYAYELWMEGRGVEFVDPSLDDTASPCKIMRCMQVALLCVQENSSDRPSMLEVDSLLKNEGAVIGTPKMPAFSVQKRGDEEETSRSGIKFYSINDVTISQLAPR*	750

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g00742	749	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	29	372	IPR001223	GO:0005975
	Lapu3g00742	749	SMART	2g34	29	356	IPR011583	GO:0008061
	Lapu3g00742	749	CDD	GH18_plant_chitinase_class_V	27	362	-	-
	Lapu3g00742	749	FunFam	Uncharacterized protein	406	506	-	-
	Lapu3g00742	749	FunFam	Uncharacterized protein	507	711	-	-
	Lapu3g00742	749	Pfam	Glycosyl hydrolases family 18	34	356	IPR001223	GO:0005975
	Lapu3g00742	749	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	552	564	IPR008271	GO:0004672\|GO:0006468
	Lapu3g00742	749	SMART	serkin_6	431	708	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g00742	749	Gene3D	Transferase(Phosphotransferase) domain 1	507	708	-	-
	Lapu3g00742	749	Gene3D	Glycosidases	44	357	-	-
	Lapu3g00742	749	SUPERFAMILY	(Trans)glycosidases	32	358	IPR017853	-
	Lapu3g00742	749	ProSitePatterns	Protein kinases ATP-binding region signature.	437	459	IPR017441	GO:0005524
	Lapu3g00742	749	Pfam	Protein tyrosine and serine/threonine kinase	433	699	IPR001245	GO:0004672\|GO:0006468
	Lapu3g00742	749	Gene3D	-	257	327	IPR029070	-
	Lapu3g00742	749	CDD	STKc_IRAK	437	704	-	-
	Lapu3g00742	749	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	359	746	-	-
	Lapu3g00742	749	ProSiteProfiles	Protein kinase domain profile.	431	702	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g00742	749	Gene3D	Phosphorylase Kinase; domain 1	405	506	-	-
	Lapu3g00742	749	SUPERFAMILY	Protein kinase-like (PK-like)	415	717	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g00742	Lapu-Chr3	7829580	7833610	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g00742	383	749	Receptor kinase-like Gene Family	AT4G23220	48.294	4.05e-114	358

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lapu3g00742		Glyco_hydro_18	2.8e-56	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g00742	-		-	aprc:113847882	1214.13