Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00737 ATGGTAGAGGAAGACCATTTTCCTGTGGGTTTGCGTGTACTTGCCGTTGACGACGACCGAACTTATCTCACAGTGTTGGAGAATCTGCTTCGCAAATGCCAGTATAATGTTACTGCAACTACTCAATCGGTCAAGGCGTTAGAAATGCTGAGGAAAAACAGAAATAAGTTTGACCTTGTTATCAGTGATGTGAATATGCCAGAAATGGATGGGTTTAAGCTGCTTCAGTACGTGGGACTTGAGACGGACCTACCCGTTATCATGTTGTCAGGATACGGTGATAAAGAGCGGGTGATGAAAGGTGTCATATATGGCGCTTGTGACTTTTTAACGAAACCAGTTCGAATTCAAGAGTTACAGAACATATGGCAACATGTAGTGCGGAGAAAGATTGATAGCAAGGATAAGAATAAGACTGCAAGTGAGGAAATTGACTGCAGCATGGCTGCTAAGTTTGCAAATGAGGAGGAGCCATGCACTATTGCTGGGGAATGTAGTCAAACCTTGGCACCAAAAACTAATGCTAACAAGAATACAAAAGTGGATCATAAAAGGAAAGAACACTGTGCGGTTGAGGAAGTGGTAGAAGATGATAAAGAGAACGATGAACCCTCAAATCAGAAAAAATCTCGTTTAGTTTGGGATGCCGAGTTGCACAACAAATTTCTTTCTGCCGTTAATCAGCTGGGAATTGACAAGGCTTTCCCCAAGAAAATACTTGACTTGATGAATATTGAAGGACTTTCAAGAGAAAACGTAGCAAGCCATCTTCAGAAGTTCAGACTTGGTCTCAAAAAGCCCAATCAGCGTGCTAGCATGTTTGCTACGTTGGGTAACAGTGATCCTTACCACCGTACGGGTTCAGTTGATTGCTTTCGCACTTCATCGGAATCAGGAGCAATGTTATGCACCACATTACCGTCATATGCATATGCACCTGGTGGAATGTTTAGTGGGTTAAACTCTCCATCCAGCTTGAACACGAGAGGAATGAACTCATCTGCAATTGTTCAGGCTGCTCAGTCTCGAAACATTAATAGCAGCTCCATAAAAACACATGGAAACATGCACTCGTCCATATTTTCTGCAAATCAAACCTCAAGCTTATTGCAGGGAATTCCAACATCAATCCAGGCTAACCAATTTAAACCGAACAACTCTACAGCTGGTATTAGGAGGTTTAATCTACTTGATGACTCAACTGGATTTAAAGATTTCTCTAGTTTCTCGGGCAATAGAGCCACTGTGAGAAATGCAGCAAATAATTCTCTTCCTGGTTTCTCAAATAACCCTTTACTTTTTCAAGGAATTTCCGCACTAACACATCGTTCGGAAGCATTGAGAAATACTTCTTCTTTTGGAGCTGCTGCTGTGAAAGCACAACCTTTTGATCCAAACTCATGTGGTTCATCTAAAATGGGCGATGATTATAATAATGAAAGCTGGCAGGGAGCAGCTCCAATATCTAACTTTCCTTCCAATACTTCTGCTGTCAGTAACGTTTTCAATAATGATCAACTGCTTCAGCGTAACTTAAAATTGTCCTCATACACTTTTCGCAGTAGGAACAATCCAGTTGGTTTTTCTTCCTCTGTTCCTTTGGAGGATGATGTCCTTGGTGAGATGCTACACCAAGACGGCTTACTTGGGAATATCTTACTAGCTTCAAGTTACACCCAGCATCCAGGCTGCGAAACAGACAAGGGAGGTTGCAGCAATGACATAAGCAAAACCTTCAATTCCATAAATCCTGTCATTTCTCTAAATGGAGGCACTGTTTCCTTGGGACATAGTTATGACCAAAACAATACGGTTGACAATAAGAGAATAGATGCATCTTTGGTTTGCCAAATGAACAGCATTAATCCATCAATCACACAGTCTAGTGAAGGTGAGAATTTCTATTCAATGAAGTCAAATGATGCTTTCGTTTTGCAGAGCATGAAGCTCGATGAAGGACTCGTGCAGAATAGTTTGGCGTCCTTGGATGACATAATGAATGAAATAGACGAACAGGAGCTAAATGAGATTATGTTGATGAATGGAGAAATAGAGTTTGATGATTATCATGATGGATCATGCAAATGA 2088 0.4114 MVEEDHFPVGLRVLAVDDDRTYLTVLENLLRKCQYNVTATTQSVKALEMLRKNRNKFDLVISDVNMPEMDGFKLLQYVGLETDLPVIMLSGYGDKERVMKGVIYGACDFLTKPVRIQELQNIWQHVVRRKIDSKDKNKTASEEIDCSMAAKFANEEEPCTIAGECSQTLAPKTNANKNTKVDHKRKEHCAVEEVVEDDKENDEPSNQKKSRLVWDAELHNKFLSAVNQLGIDKAFPKKILDLMNIEGLSRENVASHLQKFRLGLKKPNQRASMFATLGNSDPYHRTGSVDCFRTSSESGAMLCTTLPSYAYAPGGMFSGLNSPSSLNTRGMNSSAIVQAAQSRNINSSSIKTHGNMHSSIFSANQTSSLLQGIPTSIQANQFKPNNSTAGIRRFNLLDDSTGFKDFSSFSGNRATVRNAANNSLPGFSNNPLLFQGISALTHRSEALRNTSSFGAAAVKAQPFDPNSCGSSKMGDDYNNESWQGAAPISNFPSNTSAVSNVFNNDQLLQRNLKLSSYTFRSRNNPVGFSSSVPLEDDVLGEMLHQDGLLGNILLASSYTQHPGCETDKGGCSNDISKTFNSINPVISLNGGTVSLGHSYDQNNTVDNKRIDASLVCQMNSINPSITQSSEGENFYSMKSNDAFVLQSMKLDEGLVQNSLASLDDIMNEIDEQELNEIMLMNGEIEFDDYHDGSCK* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00737 695 FunFam Two-component response regulator 205 267 - -
Lapu3g00737 695 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Lapu3g00737 695 Gene3D - 11 146 - -
Lapu3g00737 695 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Lapu3g00737 695 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Lapu3g00737 695 PIRSF RR_ARR_type-B 1 695 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lapu3g00737 695 Gene3D - 205 266 - -
Lapu3g00737 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 329 IPR045279 GO:0009736
Lapu3g00737 695 SMART REC_2 11 123 IPR001789 GO:0000160
Lapu3g00737 695 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Lapu3g00737 695 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Lapu3g00737 695 SUPERFAMILY CheY-like 10 134 IPR011006 -
Lapu3g00737 695 Coils Coil 655 675 - -
Lapu3g00737 695 CDD REC_typeB_ARR-like 13 127 - -
Lapu3g00737 695 Pfam Myb-like DNA-binding domain 213 259 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00737 Lapu-Chr3 7786180 7789833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00737 5 431 Response Regulator Gene Family AT2G25180 43.056 1.30e-97 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lapu3g00737 Response_reg 3.2e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00737 K14491 - vun:114177568 1140.18