Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00727 ATGCAAGGCCCTAACAATAACTCTCTCTTTCACAACGCTACTACTAACAATCAGCAACAGATCCACTTTGACGCCACTTCCAACGACGATTTCCTCAAACAAATGCTCTCCACCCTCCCTTCTTCTCCATGGACACTTGACCCCAAACCCAACCCCAACCCCAACCCCTTGTGGGACCCTGATTCCGATCACACCACATCGGATCACAACAACCTTCTTTTCCCCTATGACCTCGAACATGCCAACTTGGCCTCCAAGTTTCGCAACCACCAGATCACCGATGACAAAGCCTCCGCTCTAATGCTCCAACACCACCACCATCTCCTCCTCTCCTCCGCCGCCGCTGCTGCTGCTGCCAATTCCCCCCTCCTCCACATGCCCTTGTCCTCTCTAAACGACGTCGTTCATCCCCCCTCCTTCAAATCTCCCACTCCCAACGCTGACGCTCCTCCCGTTCAACCCCTCTACAACGCCTTCTCCTCCTCTCTTCAAGGCGCCGCCCAACCCTCCAACCAAACTCACCATTTTCAACTTCCTCAGCAGGGGCAGAGTTTTGGAGCTTCGGCTCCGGCTAGCGGTGGTGGTTCGGGTCAGCCGAAGCAGAGGGTTAGGGCGAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCCGAAAGGTTGCGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTGCAGGAACTGGTTCCCAACGCCAACAAGACTGATAAGGCCTCAATGTTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGGTTTTAAGCATGAGCAGATTGGGAGGTGCAGCGGCTGTGGCACCCCTTGTTGCTGATGTATCTTCTGAGGGAGGCGGCGACTGCGTTCAACCAAAACGCACCAACGGCAACCAGGCTTCCTCAAACGACAGCCTGGCAACGACGGAGCAGCAGGTGGCGAAGCTGATGGAGGAAGACATGGGGTCCGCCATGCAGTACCTGCAGGGGAAAGGTCTCTGTCTTATGCCAATTTCTCTGGCCACCGCCATCTCCAAAGCCACGTGTCACACCAGGAACCCTTTCATCAACGGTGATGGGCCCTCCTCTCCCGGAATGTCCGCGCTCACCCTGCACTCTTCTACTCTCAGTAACGGCCTCGTCAAAGATGCTGCCTCCGTTTCCAAATCCTGA 1179 0.5556 MQGPNNNSLFHNATTNNQQQIHFDATSNDDFLKQMLSTLPSSPWTLDPKPNPNPNPLWDPDSDHTTSDHNNLLFPYDLEHANLASKFRNHQITDDKASALMLQHHHHLLLSSAAAAAAANSPLLHMPLSSLNDVVHPPSFKSPTPNADAPPVQPLYNAFSSSLQGAAQPSNQTHHFQLPQQGQSFGASAPASGGGSGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGDCVQPKRTNGNQASSNDSLATTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHTRNPFINGDGPSSPGMSALTLHSSTLSNGLVKDAASVSKS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00727 392 MobiDBLite consensus disorder prediction 182 218 - -
Lapu3g00727 392 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 346 - -
Lapu3g00727 392 Pfam Helix-loop-helix DNA-binding domain 214 259 IPR011598 GO:0046983
Lapu3g00727 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
Lapu3g00727 392 MobiDBLite consensus disorder prediction 288 308 - -
Lapu3g00727 392 MobiDBLite consensus disorder prediction 294 308 - -
Lapu3g00727 392 MobiDBLite consensus disorder prediction 137 156 - -
Lapu3g00727 392 SMART finulus 215 264 IPR011598 GO:0046983
Lapu3g00727 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 269 IPR036638 GO:0046983
Lapu3g00727 392 MobiDBLite consensus disorder prediction 39 66 - -
Lapu3g00727 392 Gene3D - 204 266 IPR036638 GO:0046983
Lapu3g00727 392 FunFam Transcription factor bHLH66 206 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00727 Lapu-Chr3 7721260 7725841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00727 187 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.500 1.90e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g00727 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00727 - - gmx:100801457 465.692