Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00723 ATGCTCCGCAAATTGTTCTTCCGCAAGCCTCCAGATGGCCTCCTCGAGATCTGCGAGAGAGTTTACGTTTTTGATTGCTGCTTCACCACGGATGCTTGGAAAGAAGCGAATTACAAAGAGTACGTGGATGGGATAGTTGGTCAACTTAGGGAGAACTTGCCTGATGCTTCGATTCTGATTTTCAATTTTCGCGAGGAAAATACCAAGAGTCAGATGGCAAATATCGTGTCTGAGTACGACATTACTATCATGGACTATCCTCGGCACTACGAAGGTGTTCCTGTGCTCAAAATGGAGCTCATCCACCACTTTCTGAGGTCTGGTGAAAGCTGGCTTTCGCTTGGGCAACATAATGTGTTGTTGATGCATTGTGAACGTGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTATAGAAAGGTTTATACTGGGGAGCAGAGGACTCTCGATATGGTTTACAGGCAGGCTCCACACGAGCTTTTGCATTTGATGTCACCGTTGAATCCTATCCCTTCCCAACTGAGGTATCTGCTGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCTCTGGACAGGGCACTTATGTTGGACTGCATCATTCTCAGATTCTTCCCAAACTTTGACGGTGAAGGTGGTTGTCATCCCATGTTTAGAATTTATGGACAGGATCCATTTAGTACCGATAAAAATCCAAAAATGTTGTACTCAACGCCAAAGAGAAGCAAAAGTGTCCGGGCCTATAAGCAGGGAGAGTGTGAACTTTTTAAAATTGATATCAATTGCCATATTCAAGGTGATGTTGTCATTGAGACTGTTAACTTGAATGGTGACATGAAGCGTGAAAGGATGATGTTTCGAGTCATGTTTAACACAGCCTTCGTTAGATCTAATATTTTGATGCTTAACCGCGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAAAGATTTTAGAGTTGAGATCCTTTTCTCAGAGATGGATGCTGCTGCAGTGGTTATTGCCAATGAGACCTCATGCTTTGAGGAGAAGGAAGGACTGCCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGAACCCCAAGGCAGATGCTGCACTAAATGCTCTCCAACTAATTAGTGCTTCAACTATGAATGATTGGTTGGATGAAAAAGGTCCTAGAACACCTCAAGAGAATTTGAATAAAGAGATACAATCTTCATTATCAACCAAGACATCCCTAGATAATGATATGATCAGAAAAGAGGATAAGACCAAGAAGGTCGAGGGTATTCTGCAACAACCAAGTACACCTAACAATATTTGTCAAGAGACAACCAGATCTTCTAAAAGGACTTTGGAATCCAATAAATGTCCAACAAGACCTACAAATCTTGACATAAAACTCCAGGCACCTCATCCTGATACTTCTTTTTCTCCTCGAACACCTCCTTTGAGGCCTCAATCCACTAGTGCTAAAGAAGCTCACGATTCTCCTCCCCAAAAAGAATCACCCCGTTCTTATATTTTGCCTTTGCAATCAGAACACCCATCACAAGACAAAAGTCATTCATCTATTTCTGTCCCTACACATGGCACCCAATTGTCATCTACTTTTCAAAGCAAGTCACCAGCTGACACCATTTCCCATCCTTCAGCTTCAACAATTACTTCAACTCAGTCATCTCCTTCACTTTCTTCCAAAAATGTGAATGAGATTCCTCCTATTAAAACAAGATTAGAATCTTCACCTTCACAACCTCCAACTCCTCCTCCTCCCACTCCTCCACTTAATGATCATAGACGTGTTCGAGCTGAACCTCCTCCTCCACCACCACCACCACCACCTCCTCTTCCTTCAAACAAAGAACTACATGTTAAGGCTAGACCCCTTCCTTCTCCTCAATCACATGTGAATGTGGAGCCACAGGTTAGAGATGGCCCCCCTCCTCCCCTTTCTTTAAAAGAGGAGCAACCTACTAGGTTTGAAGCTCCTCCACCTCCTTGTCTCTCCGAGAAAGTTACAGGTTCTACTACAGTACCCCCTCCACCCCCACAACCACTTTTAAGTGAGGCACTTTACTCAAATCACACCAATTCATCATTGCAAAAATCTCTAGCTCGTCCCGCTCCTCCCCCTCCTCCTGGGGCACCGGCTCCTCCCCCTCCTCCTGGGGCACCGGCTCCTCCCCCTCCTCCTGGGGCACCGGCTCCTCCCCCTCCACCTGGAGCACCTGCTGCTCCACCACCTCCAATGCCCTTTGGTATAGGAGGTCTAAAATCAAGCAATCCTTTTCCAGGATCTCTTTCTGTGAATGGTGATGGAAATAATGTGTCAACTCGATCTACTTCACCAGCGAACTTAAAGGAACGAATGTTATCACGAACAATTGCCTCAAAAAATAACGCGAAAAAGTTGAAGCCTCTGCATTGGTTAAAACTATCTAGAGCAGTGCAAGGAAGTTTATGGGCCGAGACACAGAAATCTGGTGAAGCTTCCAAGGCCCCAGAGATTGATATCTCAGAGCTTGAGAATCTTTTCTCAGCAGCAGCCCCAAGTTCAGGTATTGCCAAAAAGTCAAATGTCCAAAGCTCAGCTGGACCTAAATCTGAAAAAGTGCAACTGGTTGAACATAGGCGAGCATATAATTGTGAAATCATGCTTTCACAAGTCAAAGTGCCGTTGCATGATTTGATGAGCTCAGTACTAGCACTGGAAGAGTCAGCACTGGACACTGATCAGGTTGAGAACCTCATAAAGTTCTGTCCAACAAAAGAGGAGATGGAATTACTCAAGGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAGTTCTTAATGGAATTGATGAAAGTACCACGGGTGGAATCCAAGCTCAGGGTTTTTTCATTCAAGATTCAATTTCGCCCTCAGGTTTCTGACCTAAGAAAGAGCTTGAGTGTTGTGAATGCTGCTTCAGAAGAGATCAGGAATTCGGTCAAACTAAAGAGAATTATGCAAACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCCGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTAACCGAGACACGTGCACGGGACAAGAAGATGACTCTCATGCATTATCTTTGTAAGGTGCTAGTTGACAAACTACCGGAAGTTTTAGACTTCTCCAAGGATCTTTCTGACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTAGTACAGGAACTATCAACCGCTGAAAATGATGGACCAATATCAGAAACTTTCCGCAAGAAATTGAAAGAGTTCCTTGGTTATGCTGAAGCGGAAGTCCGTTCATTGGCTTCACTATATTCTAGCGTGGGTAGGAGCGTGGATGCATTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAGCAAGTCGCATCAACTTTGCTCAACTTTACTAGGATGTTCAACAAAGCCCATGAAGATAACTGCAAGCAGCTAGAGCTTGAAATGAAGAAAACTGAAAATGAGAAAAAGAAATGTGAATCAGAAAGAATTTTACCTACAGCTATCCGGACTGGCAATGTCAAATAG 3657 0.4364 MLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWKEANYKEYVDGIVGQLRENLPDASILIFNFREENTKSQMANIVSEYDITIMDYPRHYEGVPVLKMELIHHFLRSGESWLSLGQHNVLLMHCERGGWPVLAFMLAALLIYRKVYTGEQRTLDMVYRQAPHELLHLMSPLNPIPSQLRYLLYVSRRNVALDWPPLDRALMLDCIILRFFPNFDGEGGCHPMFRIYGQDPFSTDKNPKMLYSTPKRSKSVRAYKQGECELFKIDINCHIQGDVVIETVNLNGDMKRERMMFRVMFNTAFVRSNILMLNRDEIDILWDAKDHFPKDFRVEILFSEMDAAAVVIANETSCFEEKEGLPMEAFAKVQEIFSHVDWMNPKADAALNALQLISASTMNDWLDEKGPRTPQENLNKEIQSSLSTKTSLDNDMIRKEDKTKKVEGILQQPSTPNNICQETTRSSKRTLESNKCPTRPTNLDIKLQAPHPDTSFSPRTPPLRPQSTSAKEAHDSPPQKESPRSYILPLQSEHPSQDKSHSSISVPTHGTQLSSTFQSKSPADTISHPSASTITSTQSSPSLSSKNVNEIPPIKTRLESSPSQPPTPPPPTPPLNDHRRVRAEPPPPPPPPPPPLPSNKELHVKARPLPSPQSHVNVEPQVRDGPPPPLSLKEEQPTRFEAPPPPCLSEKVTGSTTVPPPPPQPLLSEALYSNHTNSSLQKSLARPAPPPPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAAPPPPMPFGIGGLKSSNPFPGSLSVNGDGNNVSTRSTSPANLKERMLSRTIASKNNAKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDISELENLFSAAAPSSGIAKKSNVQSSAGPKSEKVQLVEHRRAYNCEIMLSQVKVPLHDLMSSVLALEESALDTDQVENLIKFCPTKEEMELLKGYNGEKEKLGRCEQFLMELMKVPRVESKLRVFSFKIQFRPQVSDLRKSLSVVNAASEEIRNSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDKKMTLMHYLCKVLVDKLPEVLDFSKDLSDLEPAAKIQLKFLAEEMQAINKGLEKVVQELSTAENDGPISETFRKKLKEFLGYAEAEVRSLASLYSSVGRSVDALILYFGEDPSRCPFEQVASTLLNFTRMFNKAHEDNCKQLELEMKKTENEKKKCESERILPTAIRTGNVK* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00723 1218 SUPERFAMILY Formin homology 2 domain (FH2 domain) 879 1205 - -
Lapu3g00723 1218 SMART PTEN_C2_2 195 334 IPR014020 -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 438 471 - -
Lapu3g00723 1218 Coils Coil 1178 1205 - -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 592 606 - -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 652 674 - -
Lapu3g00723 1218 PANTHER FORMIN-J 689 1203 - -
Lapu3g00723 1218 SMART it6_source 804 1218 IPR015425 -
Lapu3g00723 1218 Gene3D - 194 338 - -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 395 799 - -
Lapu3g00723 1218 Pfam Formin Homology 2 Domain 809 1177 IPR015425 -
Lapu3g00723 1218 ProSiteProfiles Formin homology-2 (FH2) domain profile. 804 1203 IPR015425 -
Lapu3g00723 1218 ProSiteProfiles C2 tensin-type domain profile. 197 335 IPR014020 -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 423 437 - -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 699 714 - -
Lapu3g00723 1218 Pfam C2 domain of PTEN tumour-suppressor protein 198 334 IPR014020 -
Lapu3g00723 1218 Gene3D Protein tyrosine phosphatase superfamily 12 189 IPR029021 -
Lapu3g00723 1218 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 10 185 IPR029021 -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 615 629 - -
Lapu3g00723 1218 Coils Coil 1084 1111 - -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 515 591 - -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 715 763 - -
Lapu3g00723 1218 Gene3D Formin, FH2 domain 802 1188 IPR042201 -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 406 422 - -
Lapu3g00723 1218 MobiDBLite consensus disorder prediction 771 799 - -
Lapu3g00723 1218 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 335 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00723 Lapu-Chr3 7662668 7673605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00723 797 1201 Protein tyrosine phosphatase (PTP) family AT5G58160 75.309 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00723 - - gmx:100786096 1882.07