Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00708 ATGGAATTCAAGTTTCGTGATGGTGAAAACCGAAGCAATACCACGCTGTCACCGCAGCAGCGCCCTCTCTCCACTGTCTCTTCCTTCTCCGGTCACCCATTACGAGGTGGTTTCCCGGGTATTATCCCAGCGCCGAGAGTGTACCAACCTTCTTTGCCTATCAAGGCCGAGGAAGCATTCTGGCGAGATATGGAAAGGGAGCAGATATGGCGGGAGATGGAGAAGGAGGAAATAAGGAGAGAGATTCTGGCCGGTGAGATGGCACGGCGGCGTGAATTGGAGGAGGAGGTGAGGAGGGAATTGGCGTCGGAGAGAGCACTGAGAATGCCGATGCACAGGATGGAAGGAATCATGTTTCGGGAACGAGTTTCGATGTCTATGAATCAAGGAATGAGATTGAAGAATCCTATTAATAACATCAACATATCTGATGGACCACAACCCCAGTTAGCCCCTAAGGCTGATATCACACAGTTCTATAACCACACACAGACTCAAACGCCAACTAAAAAGCTGACTAGCAAGAATAATGTAATCATACTGGCTAAGCCAGATGCTGCTCTTTGTGGTGCGAAGTGCAAAGAGGTGCTAGATGCTGATCTTTCTGGTGTGAAGCGCAAAGAGGTGCTAGATGCTGATCTTTCTGGGGTGAAGCGCAATGAGGTGCTAGATGTTGATCTTTCTGGAGTTAAGCGCAAAGAGGTGATAGATGTTAAGCTTGGTGGTGCCAAGCGCAAAGTGGTGACACTTTTTCCAGATGATGACAAACATTCTGGATCTAGCTTGCAGAAGAAAGCCAAGAAGGACTGGAGTTGTTCATTATGTCAGATTACTACTACAAGTGAGAAAGGCTTGAATGATCATCTTCAAGGGAAAAAGCACAAGATTAAAGCAGCATCCCTTACAACTCAAAAGATAGGTAAGGACACCAAAACAACATTATCATTAAAGAAAAGTAACCAATGTGTGAAATCTACTAAAGTTGTTTTTACCATGAGTTCAGGGTTGGGTAGTCGAAGACTTCAATCTGGCATAAACCCAGCAGGCAAAGCCAAACTGGAACTCAGAATAGAGGATTTAGCTGTGCAGAAAACTCACGATTTAGTTGACAGGGATACTGAAAATGAAGCAACTAGTGAGAAAGAAGTTCGGGAGACAAATGCATCAACAACAAAGAAGAAGTTCAAATTTTACTGTGCATTTTGTGAAGTTCAAACTCACTCAGAAAGTGTGATGGAAAGTCATAAAAGTGGAAAAAAGCATCTGGCTAATATTAAAAAATTTAGCCCAAACAATGATGCAGCTGCTTCAAAATCTGAGTAA 1323 0.4384 MEFKFRDGENRSNTTLSPQQRPLSTVSSFSGHPLRGGFPGIIPAPRVYQPSLPIKAEEAFWRDMEREQIWREMEKEEIRREILAGEMARRRELEEEVRRELASERALRMPMHRMEGIMFRERVSMSMNQGMRLKNPINNINISDGPQPQLAPKADITQFYNHTQTQTPTKKLTSKNNVIILAKPDAALCGAKCKEVLDADLSGVKRKEVLDADLSGVKRNEVLDVDLSGVKRKEVIDVKLGGAKRKVVTLFPDDDKHSGSSLQKKAKKDWSCSLCQITTTSEKGLNDHLQGKKHKIKAASLTTQKIGKDTKTTLSLKKSNQCVKSTKVVFTMSSGLGSRRLQSGINPAGKAKLELRIEDLAVQKTHDLVDRDTENEATSEKEVRETNASTTKKKFKFYCAFCEVQTHSESVMESHKSGKKHLANIKKFSPNNDAAASKSE* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00708 440 SUPERFAMILY beta-beta-alpha zinc fingers 393 427 IPR036236 -
Lapu3g00708 440 SMART ZnF_U1_5 394 428 IPR003604 GO:0003676|GO:0008270
Lapu3g00708 440 SMART ZnF_U1_5 267 301 IPR003604 GO:0003676|GO:0008270
Lapu3g00708 440 PANTHER OS06G0651300 PROTEIN-RELATED 1 433 - -
Lapu3g00708 440 MobiDBLite consensus disorder prediction 412 440 - -
Lapu3g00708 440 MobiDBLite consensus disorder prediction 10 30 - -
Lapu3g00708 440 Pfam Zinc-finger of C2H2 type 270 294 - -
Lapu3g00708 440 Gene3D Classic Zinc Finger 375 427 - -
Lapu3g00708 440 Gene3D Classic Zinc Finger 253 300 - -
Lapu3g00708 440 SUPERFAMILY beta-beta-alpha zinc fingers 253 301 IPR036236 -
Lapu3g00708 440 MobiDBLite consensus disorder prediction 1 30 - -
Lapu3g00708 440 Pfam Zinc-finger double-stranded RNA-binding 396 421 IPR022755 -
Lapu3g00708 440 SMART c2h2final6 397 421 IPR013087 -
Lapu3g00708 440 SMART c2h2final6 270 294 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00708 Lapu-Chr3 7511379 7513929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00708 270 428 C2H2 Transcription Factor Family AT2G19380 21.637 4.15e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00708 - - vun:114176770 418.313