Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00685 ATGGTGCAACCTTTTTCCATGGCCAAAAAGTCACACTCTCAGCTGCGAACCCAGAAAAATCTTAATGCAAGCACCACTGCCAATAATCTCAATGCAACCAACACTGTCTCCACCAAGGTCAAACGAACCAGAAGAAGTGTCCCTAGAGACTCCCCTCCTCAACGCAGCTCCATATACCGAGGAGTCACTAGGCACCGATGGACTGGTCGATACGAAGCTCATTTGTGGGACAAGCACTGCTGGAATGAAACACAGAACAAAAAAGGACGACAAGTCTACCTTGGTGCTTATGACAATGAAGAGACAGCTGCACATGCTTATGATCTAGCAGCACTTAAGTACTGGGGTCAAGATACCATTCTTAATTTTCCGCTATCAAACTATCTGAATGATCTGAAAGAAATGGGGGGTCAATCACGGGAGGAGTATATTGGATCACTGAGGAGGAAAAGCAGTGGTTTCTCTCGAGGGATCTCTAAATACAGAGGGGTTGCAAGACATCATCATAATGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTGTATCTCGGAACATACGCTACCCAAGAAGAAGCTGCTACGGCCTATGACCTCGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTATATTAAGTGGCTTAAGCCTAATAACAACATCAACAATAATGACCAGATTAGTATTAATCTCAGTCACATGAATAACAATTGCACTAGCAGCAACTTCACCCCAAGCCCTGATCAAGAACAAGAGCAAGAACTAAGCTTCTTCCACAACCAGGATTCACTGAATACTATTGTAGAAGAAGCCACATTGGTGCCACATCAGCCTCGTCCAGAAGGTGCCACGTCAGCATTGGAGCTTCTACTTCAGTCATCAAAGTTCAAGGAAATGATGGAGATGACATCTGTGGCCAATATGTCGACACAGGTGGAATCTGAGTTGCCACAGTGCGCGTTTCCTGATCACATTCAAACATACTTTGAGTATGAAGATTCCAACAGATTTGAGGAAGTGGATGATCTAATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCACTGTGACGAGTTCGAGAGTTGA 1128 0.4459 MVQPFSMAKKSHSQLRTQKNLNASTTANNLNATNTVSTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNETQNKKGRQVYLGAYDNEETAAHAYDLAALKYWGQDTILNFPLSNYLNDLKEMGGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNNINNNDQISINLSHMNNNCTSSNFTPSPDQEQEQELSFFHNQDSLNTIVEEATLVPHQPRPEGATSALELLLQSSKFKEMMEMTSVANMSTQVESELPQCAFPDHIQTYFEYEDSNRFEEVDDLMFKFNEFSSIVPFYHCDEFES* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00685 375 Gene3D AP2/ERF domain 58 126 IPR036955 GO:0003700|GO:0006355
Lapu3g00685 375 Gene3D AP2/ERF domain 159 220 IPR036955 GO:0003700|GO:0006355
Lapu3g00685 375 ProSiteProfiles AP2/ERF domain profile. 160 218 IPR001471 GO:0003700|GO:0006355
Lapu3g00685 375 ProSiteProfiles AP2/ERF domain profile. 58 124 IPR001471 GO:0003700|GO:0006355
Lapu3g00685 375 MobiDBLite consensus disorder prediction 21 57 - -
Lapu3g00685 375 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Lapu3g00685 375 PRINTS Ethylene responsive element binding protein signature 200 220 IPR001471 GO:0003700|GO:0006355
Lapu3g00685 375 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 286 - -
Lapu3g00685 375 FunFam AP2-like ethylene-responsive transcription factor 159 220 - -
Lapu3g00685 375 Pfam AP2 domain 58 116 IPR001471 GO:0003700|GO:0006355
Lapu3g00685 375 Pfam AP2 domain 159 210 IPR001471 GO:0003700|GO:0006355
Lapu3g00685 375 SMART rav1_2 58 130 IPR001471 GO:0003700|GO:0006355
Lapu3g00685 375 SMART rav1_2 160 224 IPR001471 GO:0003700|GO:0006355
Lapu3g00685 375 SUPERFAMILY DNA-binding domain 57 126 IPR016177 GO:0003677
Lapu3g00685 375 FunFam AP2-like ethylene-responsive transcription factor 57 126 - -
Lapu3g00685 375 MobiDBLite consensus disorder prediction 21 41 - -
Lapu3g00685 375 SUPERFAMILY DNA-binding domain 159 220 IPR016177 GO:0003677
Lapu3g00685 375 CDD AP2 57 126 IPR001471 GO:0003700|GO:0006355
Lapu3g00685 375 CDD AP2 159 220 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00685 Lapu-Chr3 7336579 7339110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00685 54 222 AP2-EREBP Transcription Factor Family AT5G57390 72.781 1.22e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lapu3g00685 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00685 K09285 - gmx:100790871 642.884