Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00662 ATGGGTAGGAGTGCCGCCTTTGTGTCTCCACCAGAACAGCCACCATATTTTCTCTCACAGCCAAACTCACCTTTTCCTCCCACTGCTCGATCTGATAGTAGTTTCAGTTTGAACGATAGGGCGTTGAAGGTTAGTCCAAGCATCCTTTTGATCATTATAATTCTGGCTATTGTTTTCTTCATTTCTGGTCTGCTACACCTGCTCGTTAGATTTCTGTGGAGACCCCAAACTAGAGAGCCTGATGATTTAGACAATGTCACTGCTCTTCAAGGCCAATTGCAGCAACTCTTCCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACCCTCCCTGTGTTCCTCTACAAGGCTATCATAGGACTCAAGAACCCCTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTCAGGTTGTTGCCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACATGTCCTCTTTGTAGAGCCAGCTTGCTCCCTGAATTCTCTGCAGGCAACTCATGTTCTCCTTATGTTCTTGTCCTAGAATCTGGCAGTGAGAGTTCCAGGGAGATTGTTCCTGAAAGAGAGGCTGCTGTTGGAAGGTCTAGTTCAGTTATGACCTCAAATTCTCGTTTTGGATGCCGTGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTATTAAGTGAAGCTCCTGATCCAACAGTACCAAAGGGTGTGGAAAAAGTGGTTACTGTTAAGCTGGGGAAGTTTAAAAGTGTGGATGGTGGAGGTGATGGTGGGGAAGGGAGTAGTACTACCAACAATGTGGATTCTAGAAGGTGTTTTTCTATGGGGTCATTTGCTTATGTCATGGACGAGAGTTCGTCACTGCAAGTGCCCATACGAACCCCAATCAAGAAGCAATCGAGTAAGAAGAAGTCTGGTTTGCCTTTGACTGCAGGACTCAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTTAAGTTTGCAGTGTTTGATGCAACTATAGTTGAGGATGATGCTGCCAGTACTGGGGCTGCAACTGAAGGGACAACTTGTAATGGGAATAGTGCTGCAATTGGAGGAAGCAGAAAGGAAAGTTTTTCCATATCAAAGATTTGGCTCAGGGGGAAGAAGGATAAGTCAAATGCTGTGGCGGATTCGTCTAGAAGGGCTGTTTCATTTCGCTTCCCGGCGAAGTCTAGTGCTGTTGCTGCTTCCGGTAGTGCTGATGATGATTTTAAGGGCAAGGATTCCAAGTTTGATACAAGGAGTACCATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGAAGTGAGTTTGATTTCGATGAGGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAACAAGGTTGTTCACTCTGCTTCCAACCTCTAG 1524 0.458 MGRSAAFVSPPEQPPYFLSQPNSPFPPTARSDSSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSAGNSCSPYVLVLESGSESSREIVPEREAAVGRSSSVMTSNSRFGCRGDSEFGSTRVDLKSGELLSEAPDPTVPKGVEKVVTVKLGKFKSVDGGGDGGEGSSTTNNVDSRRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTAGLRPAMSECDCESRRDFKFAVFDATIVEDDAASTGAATEGTTCNGNSAAIGGSRKESFSISKIWLRGKKDKSNAVADSSRRAVSFRFPAKSSAVAASGSADDDFKGKDSKFDTRSTISEMDIGKWENGGGSEFDFDEENQSCYSMDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00662 507 CDD RING-H2_EL5-like 128 171 - -
Lapu3g00662 507 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Lapu3g00662 507 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 43 393 - -
Lapu3g00662 507 MobiDBLite consensus disorder prediction 1 31 - -
Lapu3g00662 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 176 IPR013083 -
Lapu3g00662 507 FunFam RING-H2 finger protein ATL46 91 176 - -
Lapu3g00662 507 Pfam Ring finger domain 128 171 IPR001841 -
Lapu3g00662 507 SMART ring_2 129 170 IPR001841 -
Lapu3g00662 507 SUPERFAMILY RING/U-box 108 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00662 Lapu-Chr3 7057467 7059693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00662 33 507 C3H Transcription Factor Family AT2G18650 44.919 1.72e-98 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00662 - - gmx:100797283 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00662 3 7057467 7059693 Lapu3g00662 3 7057467 7059693 ECH