Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00661 ATGCCTCATCCCACACACCAACCCCAACCAAAACCTAATCCCAACCTCCTCTCCCTCTTCCTCAAACCCATAATTATGCTCCTTCTCACCTCCCTCTTCTTCCTCTTCATAGGCTTCGCTGCCTTCCTCCTCCTCCACCTCTTTCTCCTTGGCGGCGCCTTTCACCGCCTTCGCTTCCGCCCCTCCGCCGCCACTGCCCCCGCCTCCAACGCCCTCCTTCCTCGCGAAATCAACAAGCTCCCTCGCTTCCGCCTCTCACGGGGATCCCACACCCTAGCCGACTCCCACTGCGTTGTCTGCCTGGACGCCTTCCGCAGCGGCCAGTGGTGCCGGAAACTCGTCGCCTGCGGTCACGTCTTTCACCGCAGGTGCGTCGACACGTGGCTCCTCAAGGTCGCCGCATGCCCCACGTGCCGGTCACCCGTGCGACTCAATGATGGACCTACGGTACATGACCCAGCACTAGGTTCTGCTTTTGTCCAATTTCAAACCTGCGAAGCTGACTCCAATGCTCTTACCCTTTTATAG 528 0.5947 MPHPTHQPQPKPNPNLLSLFLKPIIMLLLTSLFFLFIGFAAFLLLHLFLLGGAFHRLRFRPSAATAPASNALLPREINKLPRFRLSRGSHTLADSHCVVCLDAFRSGQWCRKLVACGHVFHRRCVDTWLLKVAACPTCRSPVRLNDGPTVHDPALGSAFVQFQTCEADSNALTLL* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00661 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 7 153 - -
Lapu3g00661 175 SMART ring_2 97 138 IPR001841 -
Lapu3g00661 175 SUPERFAMILY RING/U-box 90 145 - -
Lapu3g00661 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 146 IPR013083 -
Lapu3g00661 175 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Lapu3g00661 175 Pfam Ring finger domain 96 139 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00661 11 159 C3H Transcription Factor Family AT2G18670 45.333 7.54e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00661 - - pvu:PHAVU_003G150700g 271.937