Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00652 ATGCAAAGTTACACTGCTAACTTGACTTCTATATTGACCTTGAATCAACTTCGACCCAGTATTCTGAACCTTGATGATCTAAGGAGAGGGGGTTATTACGTTGGATACCAGTCTGGGTCTTTCGTTTACGATGTGTTGATTGACCAATTTAAGTTTGAGCCGTCCAAACTAAGGCCATACAGCAACATTGGTGAGTATCATGAAGCTTTAAAGCTTGGAAGCCAAAACGGGGGTGTTGCAGCTATATTCGATGAAGTGCCCTACCTTAAAGTCTACCTTCAAGAATACGGATCCAATTACATCTTGGCCGGCCCCAGATATAGAAATGCTGGGTTTGGCTTTGCGTTCCCTTTGAACTCCAATCTCACGGCTTACTTTTCGAGAGCCATCCTGGATGTGATTGAAAGTGGATTAATGAATGAAATTGAGGAAAAATATTTTGGAAAGAATGGTATTGAAGGAGAAGACTCGTCTGTGGTAATATCTTCTGCACCTCTCAGTCTCAGCTTTCGTAGCTTTGCGGGCCTTTTCTTGATTTCTGGCATTTCAACTTTATTAGCGTTAGTGGTTTCAGAAAGAGTTACTATTTGGCAAAGGCCCATTTTGATGGCTAAAGCATTGAGTGAGAGGTATGCCACTTTCCTAGGAAACACGCATTCATCCAATTCATGA 672 0.4182 MQSYTANLTSILTLNQLRPSILNLDDLRRGGYYVGYQSGSFVYDVLIDQFKFEPSKLRPYSNIGEYHEALKLGSQNGGVAAIFDEVPYLKVYLQEYGSNYILAGPRYRNAGFGFAFPLNSNLTAYFSRAILDVIESGLMNEIEEKYFGKNGIEGEDSSVVISSAPLSLSFRSFAGLFLISGISTLLALVVSERVTIWQRPILMAKALSERYATFLGNTHSSNS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00652 223 Gene3D - 4 147 - -
Lapu3g00652 223 Pfam Ligand-gated ion channel 150 182 IPR001320 GO:0015276|GO:0016020
Lapu3g00652 223 SMART GluR_14 2 149 IPR001320 GO:0015276|GO:0016020
Lapu3g00652 223 SUPERFAMILY Periplasmic binding protein-like II 3 150 - -
Lapu3g00652 223 Pfam Bacterial extracellular solute-binding proteins, family 3 2 149 IPR001638 -
Lapu3g00652 223 Gene3D - 7 110 - -
Lapu3g00652 223 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 198 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00652 Lapu-Chr3 6885330 6886168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00652 2 190 Ion Channels AT2G29110 48.148 5.84e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00652 K05387 - gmx:100811144 318.931