Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00651 ATGCATAAGTGTTTTTCCTTCCTTTTCTCTGGGGTTTTGATTTTTCTGTTTGTGCTGCAACAAGCACCAACGGGGAATGGGTCAAATGCAACGTCAAAGTATGAAAACATCAGGTTGAGAGTAGGGGTGCCCAAGAAAGATGGTTTCCAACAATTTGTGAAAGTAGTTTGGGACACTAGTCAACAAAATTACAACGTATCTGGATATTGCATGGAGGTTTTCAAGGCCGTCATAACCCGTTTACCCTTCCCTGTTTCTCTAGATGTTGAACCTTATGATATTGCAACAAGTGAGGTTTCTGGATACGATGCACTTCTGGAACAAATCCCGTCAAAGTACGATGTGGTGGTAGGGGATGTAACAATCCTAGCCAACCGTTCAAATCATGTAGATTTCACAGTGCCATATACTGGATCGGGAGTTAAAATGGTAGTACCAGTTCAACATGGGAGAGATCAAAACATGTGGACTTTTGTTAAACCCTTCAGTTGGGATCTTTGGTTGAGCATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTCATCATGGAAAGAAATGTAAGCGCGCTGCCTAATCAAGAGGGTTCTCCAAATCAAAAAAAGCTTTGTCCTGCAACCATCTTATGGTTTCCAATTTCACAAGCCATTCTTCCAGAAAGACAAGTAGTGGTTAAAAACTGCTCAAGATTTGTGCTGATGGTTTGGCTTCTATTGGCGTTCGTCCTCATGCAAAGTTACACTGCTAACTTGACTTCTATATTGACCTTGGATCAACTGCAACCCAGCTTTCTGAACTTAAATGACTTAAGAAAAGGGGGTTATTACGTTGGCTACCAAACGGGGTCTTTTGTTCATGATGTGTTGGTTAAGCAATTTAAGTTTCACCCGTCCAAACTAAAGCCATACAGCAGCAGTTCCGAGTATCATGATGCTCTAAAGCGTGGAAGCCAAAATGGGGGTGTTGCAGCCATATTCGATGAAGTGCCCTACCTTAAAGTCTACCTTCAAGAACATGGATCCGGTTACATTTTGGCCGGCCCGAAATATAGAAATGCTGGCTTTGGTTTTGCACTACCTTTGAACTCAAATCTCACGGCTTACTTTTCGAGGGCCATCCTGGATGTGACAGAAAGTGATTTAATGAATGAAATAGAGGAAAAATATTTTGGGAAGAATGATATTGGAGGACAAGACTCGTCTGCTGAAATATCTTCTGCTCCTCTCAGTCTCAACTTTCATAGCTTTGCGGGGCTGTTTTTGATTACTGGGATTTCAACTTTGTTAGCCTTATTGATCTCAGAAAGTGTTATCTGGCAAAAGCCCATTTTGATGGCTAAAGCATTGAGTCAAAGGTATTGGTCCTTCACTGCGCCTTCCACGGACACATCTGTCCATCCAACTCATGATTTAATGCACCCTATAGAAGCAGTTTAG 1437 0.4189 MHKCFSFLFSGVLIFLFVLQQAPTGNGSNATSKYENIRLRVGVPKKDGFQQFVKVVWDTSQQNYNVSGYCMEVFKAVITRLPFPVSLDVEPYDIATSEVSGYDALLEQIPSKYDVVVGDVTILANRSNHVDFTVPYTGSGVKMVVPVQHGRDQNMWTFVKPFSWDLWLSIIIISTFIGLAILIMERNVSALPNQEGSPNQKKLCPATILWFPISQAILPERQVVVKNCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLQPSFLNLNDLRKGGYYVGYQTGSFVHDVLVKQFKFHPSKLKPYSSSSEYHDALKRGSQNGGVAAIFDEVPYLKVYLQEHGSGYILAGPKYRNAGFGFALPLNSNLTAYFSRAILDVTESDLMNEIEEKYFGKNDIGGQDSSAEISSAPLSLNFHSFAGLFLITGISTLLALLISESVIWQKPILMAKALSQRYWSFTAPSTDTSVHPTHDLMHPIEAV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00651 478 FunFam Glutamate receptor 2.7 34 154 - -
Lapu3g00651 478 Gene3D - 156 298 - -
Lapu3g00651 478 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 441 IPR015683 -
Lapu3g00651 478 SMART GluR_14 38 392 IPR001320 GO:0015276|GO:0016020
Lapu3g00651 478 SUPERFAMILY Periplasmic binding protein-like II 7 393 - -
Lapu3g00651 478 Gene3D - 31 155 - -
Lapu3g00651 478 Pfam Bacterial extracellular solute-binding proteins, family 3 63 392 IPR001638 -
Lapu3g00651 478 Pfam Ligand-gated ion channel 393 425 IPR001320 GO:0015276|GO:0016020
Lapu3g00651 478 CDD GluR_Plant 38 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00651 Lapu-Chr3 6871920 6873826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00651 38 441 Ion Channels AT2G29110 42.654 5.08e-87 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00651 K05387 - gmx:100807817 711.835