Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00648 ATGAACTCAAAGGCAGAGATGGAATTCGCTGTAGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAAAAACTTGCTGGGTCTTAGGGGCTACTGTGTTGGGGATGATCAACGGCTCATAGTGTATGATTACATGCCAAATCTCAGCCTGATTTCTCATCTCCATGGCCAGTTTGCTGTTGAAGTGCAACTCAACTGGCAAAGGAGAATGAACATTGCAATTGGCTCTGCAGAAGGACTTCTGTACTTGCACCGTGAGGTCACACCCCACATCATCCACAGGGACGTAAAAGCAAGTAACGTGCTTCTGAATTCAGAGTTTGAGCCTCTAGTTGCGGATTTTGGGTTTGCAAAACTAATCCCTGAAGGAGTTAGCCATATGACTACCCGTGTGAAGGGTACATTGGGGTACTTGGCACCTGAATATGCGATGTGGGGCAAGGTCTCGGAAAGTTGTGATGTCTATAGCTTTGGAATTCTGCTCTTAGAACTTGTAACCGGTAGAAAGCCCATAGAGAAGCTCCCTGGTGGGCTTAAGAGAACAATAACCGAGTGGGCCGAGCCTCTAATAAGCAAAGGAAAGTTCAGGGACTTGGTTGATCCAAAACTCAGAGGGAATTTTGATGAAAACCAAGTGAAACAAGCAATCAATGTGGCTGCTCTTTGCGTACAGAGTGAGCCCGAGAAACGACCCAACATGAAGCAAGTGGTTAACCTTCTTAAAGGGTATGAATCTGAAGAGAAGAAAGTGACTGTGACGAGGATAGATAGTATCAAGTATGATCAAGAACTATTGGCACTTGATCAGCCCAGTGATGAAGAACTTGATGATGCAACTGCTAGTTATGGTGTTTTCAGTGCCATCGAAGTTCAAACCATGAAGGATCCATATAAGCGCGCTGATTACAGGAAACTGGAACTAGCAGAGCAAATAATTTCCTTTCTCTGCACACACTCACAACAGTTACTGAACTTGTTTCCCAATTTTCAGTTGAAAATGGTACTTCCTTCCCCTGCCAAAATACTCATTGGCCTCTCCTTAGACCCAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTTCTAGCCAATCCAAATGACACCATTGTGGCTGTGCATGTGCTTGTTACTGCGGATAAGAAGAAGCGAGTCTCCGTCAGAAAAAGGCAATCACAGCTTAGACAAGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCTAGGGTGGCACTCAATTCCACAGTTGGTGAAGGCTTAGTGGAGGAAACCAAGTCCATCAATGCTGACTTTCTTCTTATTCGTGGCTCAAGAAATCAAACTAATAAAATTGGAACTTCTAAAGGAATTACCAGGTATTGCTTTGAGCATGCACATGAAGGGTGTACAATGGTCTCAGTTGGAAAACGTAGGAAGGCAGATCAAAGTGTCAAGCCAAACTCAGCTCATTTTAAAGATAACAAACAACCAAATTCAAGATCGTTTAAGAAGGAAAAGCCATGTGATAAGGGTGTCTCCCCTGTTCTGGAGGACTATATCTCCGGAATCAAGGCTCAGAACCGTTCACCAAGAACAGTACTAGATGATCTAGAGGGACAATCAAACAGCACAGAAGATGATACCTTCAGCACTAGGGTCTCGAGTACCACGTATACCCCATCATTGGATTCTAAGATTAAGAGCCGGTCCAAGATAAAGCCACAGTTCTCGTTTAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTCAACATTTATAAAAATGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAGATATCCAATGCTACCAACGACTTCCACCAAGATAATTTGGTTGGACGAGGTGGGTATTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGTACCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTTCTTATGGAATTGGGTGTTATTGGACATGTCTGTCATCCTAATACAGCGACTTTAGTTGGCTGCTGCATTGAAAATGGACTATATCTGATTTTCAATTACTCCCAAAATGGAAATTTGGCAACTGCATTGCATGGTAAAGGAGGAGATTCACTAGACTGGCCAATCAGGTACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTGCATAAATGTTGCAAACACCGAATAATTCACCGCGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGACTATGAGCCACAGATTGCTGATTTCGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCGGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAACAAAACCTTCTCTTATGGGCAAAGCCTCTAATGGAATCAGGGAATATTGCTGAGCTGGCTGATCCAAGAATGGAAGGTAAATATGATGGAGAGCAACTGTACAGGGTAGTGCTAGCAGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCTAATGAGCGAGGTGTTAGAGCTGCTAACCAGTGGTGAAGACAATGAGGTTGGAAAAAGCTGGAGGATCCCAAAGTTCACCTCTGATGAATTAGATGATTACTCTATGGTTTTCGGATACGATGTACCCTCAGACATATCTTTGGAGGATTATTTGTGA 2811 0.4344 MNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLISHLHGQFAVEVQLNWQRRMNIAIGSAEGLLYLHREVTPHIIHRDVKASNVLLNSEFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPLISKGKFRDLVDPKLRGNFDENQVKQAINVAALCVQSEPEKRPNMKQVVNLLKGYESEEKKVTVTRIDSIKYDQELLALDQPSDEELDDATASYGVFSAIEVQTMKDPYKRADYRKLELAEQIISFLCTHSQQLLNLFPNFQLKMVLPSPAKILIGLSLDPDDSKELLSWAIRVLANPNDTIVAVHVLVTADKKKRVSVRKRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSTVGEGLVEETKSINADFLLIRGSRNQTNKIGTSKGITRYCFEHAHEGCTMVSVGKRRKADQSVKPNSAHFKDNKQPNSRSFKKEKPCDKGVSPVLEDYISGIKAQNRSPRTVLDDLEGQSNSTEDDTFSTRVSSTTYTPSLDSKIKSRSKIKPQFSFRFIVSFLASPFRRKNFNIYKNEKRQPLLKCFSYEQISNATNDFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATALHGKGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQIADFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIAELADPRMEGKYDGEQLYRVVLAASYCVRQTATWRPLMSEVLELLTSGEDNEVGKSWRIPKFTSDELDDYSMVFGYDVPSDISLEDYL* 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00648 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 747 759 IPR008271 GO:0004672|GO:0006468
Lapu3g00648 936 Gene3D Phosphorylase Kinase; domain 1 1 44 - -
Lapu3g00648 936 Pfam Protein tyrosine and serine/threonine kinase 3 239 IPR001245 GO:0004672|GO:0006468
Lapu3g00648 936 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 337 452 - -
Lapu3g00648 936 SMART serkin_6 626 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00648 936 SMART serkin_6 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00648 936 CDD STKc_IRAK 8 241 - -
Lapu3g00648 936 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 703 907 - -
Lapu3g00648 936 ProSitePatterns Protein kinases ATP-binding region signature. 632 654 IPR017441 GO:0005524
Lapu3g00648 936 CDD USP_Like 339 471 - -
Lapu3g00648 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Lapu3g00648 936 PANTHER OS08G0249100 PROTEIN 389 906 IPR046958 -
Lapu3g00648 936 MobiDBLite consensus disorder prediction 501 515 - -
Lapu3g00648 936 ProSiteProfiles Protein kinase domain profile. 1 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00648 936 Pfam Protein kinase domain 626 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00648 936 ProSiteProfiles Protein kinase domain profile. 626 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00648 936 Gene3D Transferase(Phosphotransferase) domain 1 45 264 - -
Lapu3g00648 936 Gene3D Transferase(Phosphotransferase) domain 1 704 907 - -
Lapu3g00648 936 SUPERFAMILY Protein kinase-like (PK-like) 7 246 IPR011009 -
Lapu3g00648 936 Gene3D HUPs 332 479 IPR014729 -
Lapu3g00648 936 Pfam Universal stress protein family 339 471 IPR006016 -
Lapu3g00648 936 Gene3D Phosphorylase Kinase; domain 1 590 702 - -
Lapu3g00648 936 MobiDBLite consensus disorder prediction 482 515 - -
Lapu3g00648 936 SUPERFAMILY Protein kinase-like (PK-like) 601 893 IPR011009 -
Lapu3g00648 936 MobiDBLite consensus disorder prediction 535 559 - -
Lapu3g00648 936 FunFam PTI1-like tyrosine-protein kinase At3g15890 44 257 - -
Lapu3g00648 936 FunFam Putative receptor-like serine/threonine-protein kinase 593 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00648 Lapu-Chr3 6821031 6829834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00648 614 932 Trihelix Transcription Factor Family AT1G70460 40.950 1.23e-72 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Lapu3g00648 Pkinase 6.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00648 - - gmx:100782832 1108.2