Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00642 ATGGGGTTTGAAAAAAAAGTTGGGAAGTATCAGCTTGGTAGGACTATTGGAGAAGGTAGCTTCTCCAAGGTTAAGCTAGCTGTCAATGGCAGCAATGGTCAGAAGGTAGCGGTCAAGGTCATTGATAAGCATATGATCCTAGAAAACAATCTTAAGAATCAGGTTAAAAGAGAGATCAGAACAATGAAACTTCTGCATCATCCCAATATAGTTAGAATTCACGAGGTTGTTGGCACAAAAACGAAGATATACATCGTGATGGAATACGTATCAGGAGGACAACTATTAGACAAGTTGTCCTATGGAGAGAAGTTGAATGAACGTGAGGCAAGAAAATTATTTCAGCAACTTATTGATGCCCTGGACTACTGCCATAACCAAGGGGTCTATCATCGAGATCTCAAGCCAGAAAACCTGCTTCTTGACAGCAAGGGAAATCTCAAAGTGTCTGATTTTGGACTAAGTGCATTACAAAAGTGTAATGATGCCTTAACCACGCGGTGTGGATCCCCATGTTATGTAGCACCTGAGCTTCTACTGAGCAAGGGGTATAATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATCCTTTTTGAATTACTTGCAGGCTATTTACCATTTAACGACCAGAACATGATGAACTTGTATGGAAAGATATGGAAATCAGAATATAAATGTCCCCCATGGTTTACTCGGAGTCAAAAGAAACTAATTGCCAAAATACTTGAACCACGTGCTGCAAAGCGGATAACTATACCAGATATTGTTGAAGATCCGTGGTTTCAAAAAGATTACAAGCCTGTTTTTGCATCTGAATTTGACCAGAACACTAACTTGGAGGATGTTGATGCTGCTTTCAATTCAATTGAGGAAAACATCAGAGAGACAACGATACCTAAGTCCTCAAGTTTCATTAATGCGTTTGAACTAATAGCCATGTCTCAGGACCTTGATCTATCTGGTCTTTTTGTAGAACAGGATGAAAAGAAGCAGACAAGAAGGCTGGGATCCAAACACACTACCAATGAAACAATAGAAAAAATAGAAGCTGCTGCAACAGATGTAAGACTGTCAGTAGAGAAAATTAGCAACTTTAAGATAAAAATGCAACCGAAACGGATAATGACCATGCCCATGACCAGGTGTTCTAGATCATACTTATCAGCCCAGGTGATTGAAGTTGCTCCAACTCATTGTGTTGTAGAAATATCAAAATCTACTGGAGATCTAAGAATCTACAACAAATTTTGTGAAAGTTTATCAAATCTGCTGAAGCAAAAAGCCGGTGTGCCATCAGAAAGCCAAGATTCTGAAGAGCCAAAAAGTGAAGGTGGCAAACTTTTTCGTGGCTACATATCTTCTTGA 1368 0.3977 MGFEKKVGKYQLGRTIGEGSFSKVKLAVNGSNGQKVAVKVIDKHMILENNLKNQVKREIRTMKLLHHPNIVRIHEVVGTKTKIYIVMEYVSGGQLLDKLSYGEKLNEREARKLFQQLIDALDYCHNQGVYHRDLKPENLLLDSKGNLKVSDFGLSALQKCNDALTTRCGSPCYVAPELLLSKGYNGAAADVWSCGVILFELLAGYLPFNDQNMMNLYGKIWKSEYKCPPWFTRSQKKLIAKILEPRAAKRITIPDIVEDPWFQKDYKPVFASEFDQNTNLEDVDAAFNSIEENIRETTIPKSSSFINAFELIAMSQDLDLSGLFVEQDEKKQTRRLGSKHTTNETIEKIEAAATDVRLSVEKISNFKIKMQPKRIMTMPMTRCSRSYLSAQVIEVAPTHCVVEISKSTGDLRIYNKFCESLSNLLKQKAGVPSESQDSEEPKSEGGKLFRGYISS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00642 455 SUPERFAMILY Protein kinase-like (PK-like) 7 263 IPR011009 -
Lapu3g00642 455 Gene3D Transferase(Phosphotransferase) domain 1 90 291 - -
Lapu3g00642 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lapu3g00642 455 CDD CIPK_C 307 427 - -
Lapu3g00642 455 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Lapu3g00642 455 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Lapu3g00642 455 FunFam Non-specific serine/threonine protein kinase 301 429 - -
Lapu3g00642 455 Pfam NAF domain 304 362 IPR004041 GO:0007165
Lapu3g00642 455 ProSiteProfiles Protein kinase domain profile. 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00642 455 SMART serkin_6 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00642 455 Pfam Protein kinase domain 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00642 455 Gene3D Kinase associated domain 1, KA1 302 428 - -
Lapu3g00642 455 FunFam Non-specific serine/threonine protein kinase 3 302 - -
Lapu3g00642 455 MobiDBLite consensus disorder prediction 428 455 - -
Lapu3g00642 455 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Lapu3g00642 455 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 420 - -
Lapu3g00642 455 FunFam Non-specific serine/threonine protein kinase 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00642 Lapu-Chr3 6682824 6690430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00642 87 425 CBL-interacting serine-threonine protein kinases AT5G57630 60.411 2.75e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lapu3g00642 Pkinase 1.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00642 - - vun:114177464 818.92