Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00638 ATGTGTAATAAAGGGTTTCAATGCTTGAGCGAGTGTGAGAGTGAAATTGATCATAGTCAAGAATTCTTCGTCATGGATAGTCCAATTCGATCGCCAGCTGCCGGTTCAGGTTCCAGCGAAGATAGCCGGCGTGTTAAGTTCTTGTGCAGCTTTCTAGGGAGCATAATGCCCCGTCCCCAAGATGGGAAGCTGCGTTACGTCGGAGGCGAGACACGAATTGTGAGTGTTTGTAGAGATATTAGCTATGAGGAGTTGATGGGGAAGATGAGAGAGTTGTATGATGGGGCTGCTGTGTTGAAGTACCAGCAGCCTGATGAGGATCTTGATGCTCTTGTTTCTGTTGTCAATGATGATGATGTGGTTAACATGATGGAGGAGTATGACAAGTTGGGGTCAGGAGATGGATTCACTAGGCTCAGGATATTTTTGTTTTCACAATCCGAACAGGATGGTTCCTCACATTTCATTGATGGGGATGATTCTGAGAGGAGGTATGTTGATGCATTGAATAGTTTAAATGATGTTGCTGATTTTAGGAGGTTGCAACAAGGAGAGTTTCCTATGATTAGCCCTGTTGAGGATATCCATGGGGCTGCTGATCAGTTTTTTAATCCAATGAGTGTGGAAAGTGGGATTCATAGTCACAGAAGTGGGGACCTATCTATGTCACTGTATAATATGCATCATCTCACCATCCAACACCCGCAAACTATGGGCCCAAGGTATACTGAAATGGATTCTCCTTGGAATCCTGCTTATTACTCTCCTAGGCATCATGGTCTCCACGACTCCAGATCATTGGTTGAATATCCATCTTCACCGTCTAGTAGGTACCGAGTGCCATTTCCGGAGTTACCAGATAAGTGCGTTGATAGAGTGCCGGAAGAGTATGCTCGGCATCATGTAAATCACCATCCTATGTATGATAATCAACCGCAATATGCTGATAATGTTTTGTGGGTGCCGACGGGAGCAGCACATGGTGAAAAGTCATGTTTTCCAGGTAATATTCTTCATGGTTCCCATGTTGTTGATGGGAACAACATATGTGAGCAGTGTCACATGGGTTTTCAGAGAGGTCAACCACATCTGGAGCATTCTAATATAAGTAATGGACTTCCACCGGTTGCTAATCCATGTGCAGAATGCCCCCTTCCCAATAGGGATGCTTTCCCCGTGAATATTGATGCAAAGTTACATCCCGCAATGTATCCCAATGAACCTAATAATGATCGTAGGCCTGTTTATAATGATACTCAGAATCATGAGAGAGGGTGGGGTTTGCAGCATCCAACAACTGCTCGGGTAGAGGAATCAAGAGGACATGTCTCTGTATCTGGAAGAGTGAGCGATGTTCCAGTTGCAAATTTCTCTCTTGGGCATGGTAGCGTGACTGATGGACATACCCTGTCATCCAATTATCTCCATCAGCAGGTTGGACCTGAATCGAGGCCCGAACTTTTCCCTGACCAAACCATGACGGCAATACCACACATACAAATTCCTGCACCAGAAGAATGCAATGTGCGGTATGGAAATTCACATTCTCCTTATGGAGTAGATAGTAATTATGCTGTGCCCCGTGGACATGCACCTGGTTGCTGGAGAAATACTCCAATTCCTGTTCATATGGGACCATCTTATGAGGCAACTACCTCACCTCCGCAGGTGAATGGTATGGTAAATGCGGCTTTAGTTAGGGGAGAAGGCACTCCTGGGTTTTACATTGGACCAGATAGTCAAAATCAATGGGTTGATTCCTCACAGAAATTGACAGGACATGATGGTACGGCCATCCCAGAATATTCGCATGGACATGCTCTGAAGTTGAATACAACACCTCTTGGTCCAGAAAATCAACACCCAGTTACTGTAGATACCATTCACCCTCCTCAGGACATGAGTGCTGGTACCTGCTTGAAACCTTTGCAGCTTCCAAAATTATCGCTTAATATGGTTCATAATCAAGAGGTTTTAAGAAATGATGCCCATTTGGCTGAGACTAAGAGTTTTGAATCAAATAATTTGCTTGGAGAAGGAATAGTGGTAAAAATTGAGGACAGGGTTAAAAGTCCTGATACGCAGACTAGATCTTATTCAGAGCAAAATAAAGTTGCTGAGAATGCATGTCAAGCTGCTGCTTCTGTTGATTCTAATAATTCAAAGTCAAAACCTGAAGGAGACTGCAGGCATGTTGAGAAGCTGGCTGATAAGGACCATTCTGTTCCAGAAGATTCTAAGCATTTAGTTAATCAATTCAGCTTCTTGCCCGAGTTGATTGCTTCTGTGAAAAAGGCTGCATTAGAAGTTGCGGATGAGATGAAAGCTGAAGCTGATGACCCAGCCGATTCTCATAATCAAAATTTAGATACCAAAGAAGAAACAATAAATGAAGTAGAGCCAGCGAATGCTCATGGTGATTTAGAATTGGACTCTGAAAATGACCATGTAGATACTTCTAAAATTGAGCCAACGAAGGCTGAGGAAGAAGCAATTGCCAGGGGATTGCAGACTATTAAAAATGATGATTTGGAGGAGATCCGCGAGCTTGGTTCTGGAACCTATGGAGCTGTTTATCATGGGAAATGGAAAGGTTCTGACGTTGCAATTAAGAGAATAAAAGCCAGTTGTTTTTCTGGAAAGCCATCTGAAAGAGCAAGATTGATTACAGATTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCTGACAGTTCTTTAGCGACAGTCACAGAATTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATTGATCGTCGGAAGAGACTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTAAATATGAGAGATCCTCAACGCCCTGTCTGCAAGATTGGTGATTTGGGCTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGTGTACGAGGGACTTTGCCATGGATGGCCCCTGAACTTCTTAGTGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTCTACTCATTCGGAATAGTTATGTGGGAGTTGCTCACAGGGGATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGTATTGTGAACAACAGTTTACGTCCGCAAATCCCAACATGGTGTGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCTTCTGATCCTTTAGAAAGACCATCATTTTCAGAAATTTCCAAGAAGTTGAGGAGTATGGCTGCTTCAATGAATGTGAAATAG 3354 0.4299 MCNKGFQCLSECESEIDHSQEFFVMDSPIRSPAAGSGSSEDSRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVCRDISYEELMGKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSSHFIDGDDSERRYVDALNSLNDVADFRRLQQGEFPMISPVEDIHGAADQFFNPMSVESGIHSHRSGDLSMSLYNMHHLTIQHPQTMGPRYTEMDSPWNPAYYSPRHHGLHDSRSLVEYPSSPSSRYRVPFPELPDKCVDRVPEEYARHHVNHHPMYDNQPQYADNVLWVPTGAAHGEKSCFPGNILHGSHVVDGNNICEQCHMGFQRGQPHLEHSNISNGLPPVANPCAECPLPNRDAFPVNIDAKLHPAMYPNEPNNDRRPVYNDTQNHERGWGLQHPTTARVEESRGHVSVSGRVSDVPVANFSLGHGSVTDGHTLSSNYLHQQVGPESRPELFPDQTMTAIPHIQIPAPEECNVRYGNSHSPYGVDSNYAVPRGHAPGCWRNTPIPVHMGPSYEATTSPPQVNGMVNAALVRGEGTPGFYIGPDSQNQWVDSSQKLTGHDGTAIPEYSHGHALKLNTTPLGPENQHPVTVDTIHPPQDMSAGTCLKPLQLPKLSLNMVHNQEVLRNDAHLAETKSFESNNLLGEGIVVKIEDRVKSPDTQTRSYSEQNKVAENACQAAASVDSNNSKSKPEGDCRHVEKLADKDHSVPEDSKHLVNQFSFLPELIASVKKAALEVADEMKAEADDPADSHNQNLDTKEETINEVEPANAHGDLELDSENDHVDTSKIEPTKAEEEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFSGKPSERARLITDFWKEALMLSSLHHPNVVSFYGIVRDGPDSSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNSLRPQIPTWCDPEWKSLMESCWASDPLERPSFSEISKKLRSMAASMNVK* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00638 1117 Gene3D - 63 147 - -
Lapu3g00638 1117 CDD STKc_MAP3K-like 850 1107 - -
Lapu3g00638 1117 ProSiteProfiles Protein kinase domain profile. 844 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00638 1117 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 932 1117 - -
Lapu3g00638 1117 PRINTS Tyrosine kinase catalytic domain signature 1034 1056 IPR001245 GO:0004672|GO:0006468
Lapu3g00638 1117 PRINTS Tyrosine kinase catalytic domain signature 926 939 IPR001245 GO:0004672|GO:0006468
Lapu3g00638 1117 PRINTS Tyrosine kinase catalytic domain signature 963 981 IPR001245 GO:0004672|GO:0006468
Lapu3g00638 1117 PRINTS Tyrosine kinase catalytic domain signature 1078 1100 IPR001245 GO:0004672|GO:0006468
Lapu3g00638 1117 Gene3D Transferase(Phosphotransferase) domain 1 930 1117 - -
Lapu3g00638 1117 PANTHER SERINE-THREONINE PROTEIN KINASE 111 1110 - -
Lapu3g00638 1117 Pfam PB1 domain 60 145 IPR000270 GO:0005515
Lapu3g00638 1117 SMART serkin_6 844 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00638 1117 Gene3D Phosphorylase Kinase; domain 1 830 929 - -
Lapu3g00638 1117 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 64 146 - -
Lapu3g00638 1117 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 837 931 - -
Lapu3g00638 1117 Pfam Protein tyrosine and serine/threonine kinase 845 1107 IPR001245 GO:0004672|GO:0006468
Lapu3g00638 1117 SUPERFAMILY CAD & PB1 domains 61 151 - -
Lapu3g00638 1117 CDD PB1_UP2 48 144 - -
Lapu3g00638 1117 SMART PB1_new 59 144 IPR000270 GO:0005515
Lapu3g00638 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 969 981 IPR008271 GO:0004672|GO:0006468
Lapu3g00638 1117 ProSitePatterns Protein kinases ATP-binding region signature. 850 871 IPR017441 GO:0005524
Lapu3g00638 1117 SUPERFAMILY Protein kinase-like (PK-like) 836 1105 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00638 Lapu-Chr3 6648307 6655487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00638 39 1117 MAP Kinase Kinase Kinase AT5G57610 54.856 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lapu3g00638 PK_Tyr_Ser-Thr 1.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00638 - - gmx:100779077 1944.09