Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00630 ATGAATTTCCATCCCAATACTTCTCTTCACCTAAGCCAACAAGATGATGAGATCAATCACCTCAATCTAGATCTTCTTCTTGAGCCATCTTCTTCTTCTTCATCTTCTCCTTCGCCTATAAGTCCCATTGAGCCGCGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAGAGGACACTAGCCAAGAAGAGCAGGGAAATGAGTTCAACCATGCAATCTTACGGAGCATCGGAGCAAAGATCAAATTTCAGTGCTTCACACCATCTTGGTCGTGCTCTTGGGGTTAACACAATAGTGGATAACCAAGGACAAAGTTATGTGAGGCTTGGTGGAAGAAAAGAATTCAGTTTTGGTCCCAAGGAAGGGGTCGCTTCCTGGTCAAGGGGTTATACTTCTGAGCATGTTCAGGAGGATATTGGCCAACTTGACTTGTCGTTGAGGCTTTGA 495 0.4485 MNFHPNTSLHLSQQDDEINHLNLDLLLEPSSSSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSTMQSYGASEQRSNFSASHHLGRALGVNTIVDNQGQSYVRLGGRKEFSFGPKEGVASWSRGYTSEHVQEDIGQLDLSLRL* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00630 164 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Lapu3g00630 164 Gene3D Classic Zinc Finger 39 105 - -
Lapu3g00630 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Lapu3g00630 164 FunFam Zinc finger protein 2 27 95 - -
Lapu3g00630 164 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
Lapu3g00630 164 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 100 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00630 Lapu-Chr3 6572450 6572944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00630 1 164 C2H2 Transcription Factor Family AT5G57520 46.784 3.73e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g00630 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00630 - - vra:106768043 292.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00630 3 6572450 6572944 Lapu3g00630 3 6572450 6572944 ECH