Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00629 ATGGCACCTTCTCCACAAGAATTCATCTTCAGATCCCCACTTCCCGATATTCCCATTCCCACCCACCTTCCACTACACTCTTACTGCTTCCAAAATCTCTCCCAATTCCAACACCGAACATGCCTCATCGACGGCGAAACCGGCGAATCCCTCACCTACGCCGAAGTCGACCTCACCGCCCGCCGCATCGCCGCTGGCCTCCACAACATCGGCATCCGCCAGGGTGACGTCATCATGCTCGTCCTCCGCAACTGCCCTCAATTCGCCCTAGCCTTCATCGGCGCCTCCCACCGTGGCGCTGTCATCACCACCGCCAACCCCTTCTACACGCCGCTGGAGCTCGCCAAGCAAGCTGCCGCTACCAAAACCAGGCTCGTCATAACGCAATCCGCGTACGTGGACAAGATCAAGAGTTTCGCGGACAACAATGATGTCATGGTCATGTGCATTGATAATTGTTCCTCGGAGAACGACGGCGTTTTGCATTTCTCCACGCTAACTAACGCAGACGAAACGGAAGCCCCCGCCGTTAAGATTAGCCCAGACGACGTCGTCGCGCTTCCGTTTTCTTCTGGCACTTCTGGGCTCCCCAAGGGCGTTATGTTATCGCATAAAAACTTGGTGACCACTATAGCGCAGCTAGTTGACGGCGAAAACGCGCACCAATACACTCACAGCGAGGATGTGCTCCTCTGCGTGCTGCCTATGTTTCATATCTACGCGCTGAATTCAATTTTACTCAGCGGGATTCGCTCCGGTGCGGCCGTTCTCATTGTGCAGAAGTTTGAGATGACGACGCTGTTGGAGCTGATCGAGAAGTACAAGGTAACCGTTGCGTCGTTTGTGCCACCCATCGTTTTGGCGTTGGTTAAAAGCGGAGAGGCCCATCGATACGACCTCTCGTCTATTCGCGCCGTCGTCACTGGCGCCGCACCCCTGGGAAAGGAACTACAAGAAGCCGTCAAATCTAGGCTACCACACGCCATTTTTGGACAGGGATATGGAATGACAGAAGCAGGACCACTTGCGATTAGCATGGCATTTGCAAAAGAACCCTCAGAGATAAAAGCTGGTGCATGCGGAACCGTTGTGAGAAACGCTGAGATGAAAATTGTGGACACAGAAACTGGTGTTTCCCTTCCAAGAAACCAAAGTGGTGAAATTTGCATAAGAGGCACAAAGGTTATGAAAGGATATCTAAACGACCCAGAGGCTACAGAGAGAACTATAGACAAAGATGGATGGCTACACACAGGAGATATTGGTTACATCGACGATGATGACGAACTCTTCATTGTTGATAGGTTAAAGGAATTGATCAAATACAAAGGGTTCCAAGTAGCTCCTGCTGAGCTCGAAGCGTTGTTAATTGCCCATCCAAATATCTCTGAAGCTGCCGTTGTACCCATGAAAGATGAAGCTGCCGGAGAAATTCCTGTTGCATTTGTTGTACGATCACAAGGCTCTGAGATCACTGAAGATGAAATCAAGCAATACATTTCACAACAGGTGGTATTTTACAAGAGAATTGGTAGGGTTTTCTTCACAGACTCTATTCCTAAAGCAGCCTCAGGCAAAATTCTGCGGAAGGTGCTAACTGCAAGACTTAACGAAGGTCTGGTGGTGGCCAATTAG 1635 0.504 MAPSPQEFIFRSPLPDIPIPTHLPLHSYCFQNLSQFQHRTCLIDGETGESLTYAEVDLTARRIAAGLHNIGIRQGDVIMLVLRNCPQFALAFIGASHRGAVITTANPFYTPLELAKQAAATKTRLVITQSAYVDKIKSFADNNDVMVMCIDNCSSENDGVLHFSTLTNADETEAPAVKISPDDVVALPFSSGTSGLPKGVMLSHKNLVTTIAQLVDGENAHQYTHSEDVLLCVLPMFHIYALNSILLSGIRSGAAVLIVQKFEMTTLLELIEKYKVTVASFVPPIVLALVKSGEAHRYDLSSIRAVVTGAAPLGKELQEAVKSRLPHAIFGQGYGMTEAGPLAISMAFAKEPSEIKAGACGTVVRNAEMKIVDTETGVSLPRNQSGEICIRGTKVMKGYLNDPEATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPNISEAAVVPMKDEAAGEIPVAFVVRSQGSEITEDEIKQYISQQVVFYKRIGRVFFTDSIPKAASGKILRKVLTARLNEGLVVAN* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00629 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 11 437 - -
Lapu3g00629 544 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Lapu3g00629 544 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Lapu3g00629 544 Gene3D - 437 540 IPR045851 -
Lapu3g00629 544 Gene3D - 4 436 IPR042099 -
Lapu3g00629 544 SUPERFAMILY Acetyl-CoA synthetase-like 14 538 - -
Lapu3g00629 544 CDD 4CL 19 532 - -
Lapu3g00629 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 533 - -
Lapu3g00629 544 Pfam AMP-binding enzyme 32 442 IPR000873 -
Lapu3g00629 544 FunFam 4-coumarate--CoA ligase 2 438 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00629 Lapu-Chr3 6553741 6559369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00629 7 504 Monolignol Biosynthesis Gene Families AT1G51680 65.545 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00629 K01904 - gmx:548034 969.148