Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00628 ATGAAACAACAACACCATGAACAATCTACACAAACACAACACCACAACGATGACTTCATTTTCCGTTCTAAACTCCCCGACATTTACATCCCCACGCACCTTCCTCTCCACACTTACATCTTCCAAAACCTCTCCCAATTCAACCACCGACGCTGCCTCATCAACGCCGCCACCGGAGACTGCTTCACCTACGACGCCGTCCAACAGACCGCTCGCAGAGTCGCCACTGGCCTCATGAAACTCGGCATCCAGCAGGGCGACGTCATCCTTCTTCTCCTCCGGAACTGCCCCCAGTTCGTCTTTGCATTCCTTGGCTCCTCCTTCCGCGGCGCCATCGTCACAACAGCTAACCCCTTATGCACTCCGGCGGAGGTGGCCAAGCAAGCCGCGGCGTCCAGCGTCAAACTCATCATAACGCAGGCTTCCGACGTGGACAAAGTGAAGGATTTCGCGAGGGAAAACGACGTCAAAGTGATGTGCGTTGACGCGGCGCCAGAAGGTTACCTTAACTTCTCGGAGTTGACGGAGGCAAACGGGATAGACATTCCGGCGGTTAAAATATCCCCAGATGACGTGGTGGCACTGCCGTATTCTTCAGGAACCACAGGGCTTCCGAAGGGAGTGATGCTAACGCACAAGGCGCTGGTTACAAGCGTGGCGCAACAAGTTGACGGTGAGAACCCTAATTTGTATTTACGCAGCGAGGACGTGGTGTTGTGCGTGCTTCCACTTTTCCATATTTATTCGCTCAACACTATCTTGCTCTGTTCTCTTCGAGTTGGGGCTGCCGTTTTGATAATGCCCGAATTTGAGATTGTTAAGTTGCTGGAGTTGGTGGAGAAACACAAGGTGAGCGTGGTGTCGTTTGTGCCACCCATCTTTTCGGCGATTGCAAAGTGTCCAGATTTGGAGCGATACGACCTGTCGTCAATTCGAATGATTATGTCGGGCGCCGCTCCTATGGGAAAGGAACTTGAGGATTCTGTGAGGGCCAAACTTTCCGACGCCATTTTCGGTCAAGGTTACGGGATGACAGAGGCAGGAGCTATTTCAATGTGCTTAACGTTTGCGAAGGAACCACTGCATGTGAAATCAGGTTCGTGCGGGACCGTCGTAAGAAACGCAGAAATGAAGATCCTTGACCCTTGTACTGGTGCTTCGCTCCCTAAGAATGAAGTTGGTCAGATTTGCATCAGAGGCAACCAGATCATGAAAGGATACCTAAATGACGAAGAGGCGACAGAAAGAAGTATAGATAAGGGAGGATGGTTGCATACGGGTGATATTGGGTACATGGATGACAATGATGAACTCTTCATCGTTGATCGGTTGAAGGAGTTGATCAAATACAAAGGATTTCAAGTGGCTCCAGCAGAGCTGGAAGCCATGCTAATTGCTCACCCACATATTTCAGATGCTGCTGTTGTATCCATGAAGGATGAAGTTGCAGGAGAGGTTCCAGTTGCATTTGTTGTGCGATCAAATGGTTCTAAGATCTCTGAAGATGAAATCAAGCAATACATCTCAAAACAGGTTGTGTTTTATAAAAGAATCAGTAGGGTTTTCTTTGTGAGCTCCATTCCGAAGTCTCCCTCTGGAAAGATCTTGCGAAAAGTAATCAGGGCAAAGATTTGA 1635 0.4924 MKQQHHEQSTQTQHHNDDFIFRSKLPDIYIPTHLPLHTYIFQNLSQFNHRRCLINAATGDCFTYDAVQQTARRVATGLMKLGIQQGDVILLLLRNCPQFVFAFLGSSFRGAIVTTANPLCTPAEVAKQAAASSVKLIITQASDVDKVKDFARENDVKVMCVDAAPEGYLNFSELTEANGIDIPAVKISPDDVVALPYSSGTTGLPKGVMLTHKALVTSVAQQVDGENPNLYLRSEDVVLCVLPLFHIYSLNTILLCSLRVGAAVLIMPEFEIVKLLELVEKHKVSVVSFVPPIFSAIAKCPDLERYDLSSIRMIMSGAAPMGKELEDSVRAKLSDAIFGQGYGMTEAGAISMCLTFAKEPLHVKSGSCGTVVRNAEMKILDPCTGASLPKNEVGQICIRGNQIMKGYLNDEEATERSIDKGGWLHTGDIGYMDDNDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPHISDAAVVSMKDEVAGEVPVAFVVRSNGSKISEDEIKQYISKQVVFYKRISRVFFVSSIPKSPSGKILRKVIRAKI* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00628 544 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 445 - -
Lapu3g00628 544 Gene3D - 445 544 IPR045851 -
Lapu3g00628 544 Gene3D - 11 444 IPR042099 -
Lapu3g00628 544 Pfam AMP-binding enzyme 44 450 IPR000873 -
Lapu3g00628 544 CDD 4CL 30 538 - -
Lapu3g00628 544 SUPERFAMILY Acetyl-CoA synthetase-like 17 543 - -
Lapu3g00628 544 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Lapu3g00628 544 FunFam 4-coumarate--CoA ligase 2 446 544 - -
Lapu3g00628 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 542 - -
Lapu3g00628 544 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00628 Lapu-Chr3 6544400 6552589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00628 11 512 Monolignol Biosynthesis Gene Families AT1G51680 66.211 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00628 K01904 - gmx:100779668 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00628 3 6544400 6552589 Lapu3g00628 3 6544400 6552589 ECH