Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00627 ATGGCAATGAACTCTGTTTGTGGCGGGTCCACCATGAACTACCAGTTCAGTCTAATAAATCTGTTAACAAAGAGCAGAGAAAGCATCGTCACGCAAGAAACTACAACACACGTAACTCATCAACAACTTCCTCATCACATTCTTTTCCCCTCTACCTTCTCATCTTTCACTCCCACACACTTTCTCCACCACCCAAACAACAACGTAGCAACCACAACCAAAATGGAACAACGCAAATCCACACAACTTCACAACCATGACTTCATTTTCCGTTCCAAACTCCCCGACATTTACATCCCCACGCACCTTCCTCTCCACACTTACATCTTCCAAAACATCTCCCAATTCAACCACCGTCCCTGCCTCATCAACGCCGCCACCGGAGACTGCTTCACCTATGCCGCCGTCCAACTCACCGCTCGCAGAGTCGCTGCGGGCCTCAACAAACTCGGCATCCAGCAGGGCGACGTCATCCTCCTTCTCCTCCAGAACTGCCCCCAGTTCGTTTTCGCATTCCTCGGCTCCTCCCTCATCGGCGCCATCGTCACCACCGCTAACCCCTTTTACACTCCGGCGGAGGTGGCCAAACAAGCCGCGGCATCCAACGCCAAACTCATCATAACGCAGGCATCCTATGTGGACAAAGTGAAGGATTTCGCGAGGGAAAATGACGTCAAAGTGATGTGCGTTGATGTGGCGCCGGAAGGTTACCTTCAGTTCTCGGAGTTAACGGAGGCAAACGAGGGAGACATTCCCGCCGTTAAAATATCCCCAGACGACGTGGTTGCACTGCCGTATTCTTCAGGAACCACGGGGCTTCCGAAGGGAGTGATGCTAACTCACAAGGGGCTGGTTACGAGCGTGGCGCAACAAGTTGACGGAGAGAACCCTAATTTGTATTTACGCAGCGAGGACGTGGTGTTGTGCGTGCTTCCACTTTTCCATATTTATTCGCTCAACACAGTTTTGCTCTGTTCGCTTCGAGTTGGGGCTGCCGTTTTGATAATGCCGAAATTTGAGATTTTTACATTGCTGGAGTTGGTCGAGAAACACAAGGTGAGCGTGGCGCCGTTTGTGCCACCCATCGTTTTGGCGATTGCAGAGAGTCCAGATTTGGAGCGATACGACCTGTCGTCGATTCGAATGATCATCTCTGGGGCCGCTCCTATGGGAAAGGAGCTTGAGCGTTCTGTCAAGGCCAAACTTTCAAACGCCACACTTGGACAGGGTTACGGGATGACAGAGGCAGGGCCAGTGCTTTCATTGTGCTTAGCGTTGGCCAAAGAACCACTGCATGTGAAATCAGGTTCGTGCGGGACCGTCGTAAGAAACGCAGAGATGAAGATCGTTGACCCTCACACTGCTGCTTCGCTCCCTAAGAATCAAGCTGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTACCTAAACGATGAAGAGGCCACAAAAAGAACTATAGACAAAGAAGGATGGTTGCATACGGGGGATGTTGGATACATCGACGATGATGACGAGCTTTTCATCGTTGATCGGTTAAAGGAGTTGATCAAATACAAAGGATTTCAAGTTGCTCCTGCTGAGCTGGAAGCCATGCTAATTCTTCACCCAAACATTTCTGATGCTGCTGTTGTGCCCATGAAGGATGAAGTTGCAGGAGAGGTTCCAGTTGCATTTGTTGTACGATCAAATGGTTCTAAGATCTCTGAAGACGAAATCAAGCAATACATTTCAAAGCAGGTTGTGTTTTACAAAAGAATCATCAGGGTTTTGTTTGTGGGTTCAATTCCAAAGGCACCCTCTGGAAAGATCTTGCGAAGGGACCTGAGAGCAAGGTTAGCTAGCGGTCTTCCTGTTTAG 1863 0.4949 MAMNSVCGGSTMNYQFSLINLLTKSRESIVTQETTTHVTHQQLPHHILFPSTFSSFTPTHFLHHPNNNVATTTKMEQRKSTQLHNHDFIFRSKLPDIYIPTHLPLHTYIFQNISQFNHRPCLINAATGDCFTYAAVQLTARRVAAGLNKLGIQQGDVILLLLQNCPQFVFAFLGSSLIGAIVTTANPFYTPAEVAKQAAASNAKLIITQASYVDKVKDFARENDVKVMCVDVAPEGYLQFSELTEANEGDIPAVKISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLRSEDVVLCVLPLFHIYSLNTVLLCSLRVGAAVLIMPKFEIFTLLELVEKHKVSVAPFVPPIVLAIAESPDLERYDLSSIRMIISGAAPMGKELERSVKAKLSNATLGQGYGMTEAGPVLSLCLALAKEPLHVKSGSCGTVVRNAEMKIVDPHTAASLPKNQAGEICIRGNQIMKGYLNDEEATKRTIDKEGWLHTGDVGYIDDDDELFIVDRLKELIKYKGFQVAPAELEAMLILHPNISDAAVVPMKDEVAGEVPVAFVVRSNGSKISEDEIKQYISKQVVFYKRIIRVLFVGSIPKAPSGKILRRDLRARLASGLPV* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00627 620 FunFam 4-coumarate--CoA ligase 2 516 617 - -
Lapu3g00627 620 FunFam Long-chain-fatty-acid--CoA ligase FadD 91 515 - -
Lapu3g00627 620 Pfam AMP-binding enzyme 112 520 IPR000873 -
Lapu3g00627 620 Pfam AMP-binding enzyme C-terminal domain 529 604 IPR025110 -
Lapu3g00627 620 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 86 612 - -
Lapu3g00627 620 Gene3D - 515 616 IPR045851 -
Lapu3g00627 620 SUPERFAMILY Acetyl-CoA synthetase-like 78 616 - -
Lapu3g00627 620 CDD 4CL 99 610 - -
Lapu3g00627 620 Gene3D - 80 514 IPR042099 -
Lapu3g00627 620 ProSitePatterns Putative AMP-binding domain signature. 264 275 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00627 Lapu-Chr3 6534775 6542747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00627 78 582 Monolignol Biosynthesis Gene Families AT1G51680 69.066 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00627 K01904 - gmx:100779668 929.087