Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00610 ATGTATTCGAGTTCGAGCCAGTTCGACGGCAACGCAGCCTTCTCTGGCGGCGGATTTATGCCTTCTCAGGCCACTCAGGGCACTGATCCTTCATCGGTTTCCTCCAAGAATCGCGATGCTCAGTCCTTGCTTCCTCTAACAGTGAAGCAAATATTCGATGCGTTTCAATCAAGCGATGATAAAGCCAATTTGATTGTTGACGGTGTGGACGTTAATAATGTTACTCTTATAGGAAGGGTGTGCAACAAAGCTGGACGAATTACTGATGTGACTTTTGTGCTTGACGATGGTACTGGGAAGATTGAGTGTAATAAATGGCTTCAGGAAGCTGCTGATACAAATGAAGCAGAGGCTATCTTGGACGGAATGTATGCGAGGCTCCATGGACACTTGAAAAACTTTCAGGGTAAAAGGACCTTAAACGTTTTTCATTTCAGGCCTGTGACTGACTTTAACGAGGTTGCTAGTCATTTCATCGATTGCATACATGTGCATCTCTACAATTCCAGGATTCGGAGTAGTGTCCCTAATCAGCAACATGTTATGAATTCTGCGCCAATTACTCCCACAATGGGTTATCAAGCTCAAGTTGTTCCACCAACAAATCAGTTCTCTGATCAACATGTCAATGGCCAGAAGAGGACTGAAAATATGGTTTTAGATTTTCTGCATCTTCCCTCAAACAGGTCAAGGAATGAGGGAGTCCGTCGTGATCTTATTACACAGCATCTTCAAATTCCTTTGGATAAGCTCATGCTGGCTATTAAAAATCTTATCGATGAAGGTACCGTTTATGAAACTATAGCTGATCACTACAAGTCAACGGTCGATGGTTGA 837 0.4325 MYSSSSQFDGNAAFSGGGFMPSQATQGTDPSSVSSKNRDAQSLLPLTVKQIFDAFQSSDDKANLIVDGVDVNNVTLIGRVCNKAGRITDVTFVLDDGTGKIECNKWLQEAADTNEAEAILDGMYARLHGHLKNFQGKRTLNVFHFRPVTDFNEVASHFIDCIHVHLYNSRIRSSVPNQQHVMNSAPITPTMGYQAQVVPPTNQFSDQHVNGQKRTENMVLDFLHLPSNRSRNEGVRRDLITQHLQIPLDKLMLAIKNLIDEGTVYETIADHYKSTVDG* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00610 278 Gene3D - 35 170 IPR012340 -
Lapu3g00610 278 Pfam OB-fold nucleic acid binding domain 74 144 IPR004365 GO:0003676
Lapu3g00610 278 SUPERFAMILY "Winged helix" DNA-binding domain 210 275 IPR036390 -
Lapu3g00610 278 PIRSF RPA32 2 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lapu3g00610 278 MobiDBLite consensus disorder prediction 19 38 - -
Lapu3g00610 278 Pfam Replication protein A C terminal 165 270 IPR014892 -
Lapu3g00610 278 FunFam replication protein A 32 kDa subunit A-like 36 170 - -
Lapu3g00610 278 PANTHER REPLICATION PROTEIN A-RELATED 7 275 IPR040260 -
Lapu3g00610 278 Gene3D - 206 276 IPR036388 -
Lapu3g00610 278 CDD RPA2_DBD_D 73 166 - -
Lapu3g00610 278 SUPERFAMILY Nucleic acid-binding proteins 43 169 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00610 Lapu-Chr3 6328058 6334849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00610 4 273 Core DNA Replication Machinery Family AT2G24490 44.322 7.28e-81 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00610 K10739 - gmx:100782819 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00610 3 6328058 6334849 Lapu3g00610 3 6328058 6334849 ECH