Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00609 ATGGACTCTTCTTCATCACCGCCAAACAACAACAACAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCTTCTTCCTCTCACTCTACCTCTCCTCTCTCCCTCTTCCACTCCTTCACCACTTATCCATCTCTCACCCTCACAGGCAGCAACACGGTGGATGCACCACCGGAGGCAGCCGCCGGCGGAGGGGCCACCAACCTCTCCATATTCACCGCTGCCCCCAAGTTCGAGGACTTTCTAGGCGGTTCCGCCGCTGCAGCGACAACCGCCACGGGTGCACCGCCACAACTTCCGCAGTTCTCCGCTGAGAACAACCTATACGATTCGGAGCTGAAGACAACAATAGCCGCGTGCTTCCCCCGCGGCTTCGCCGCCGAACCAACCACTGAACCTCAGAAGCCCTCTCCGAAGAAAACCGTCGACACCTTCGGCCAACGTACTTCCATCTACCGTGGCGTCACCCGGCATAGATGGACCGGAAGATATGAAGCTCATCTATGGGACAATAGTTGCAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGGTGGTTATGACAAGGAAGATAAGGCAGCTAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACAAACTTTCCGATTTCCAACTACGAGAAGGAACTGGGGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACTAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCTGCAGAGGCCTATGACATTGCAGCTATCAAATTCAGGGGGTTAAATGCAGTCACGAACTTCGACATGAGTCGCTACGACGTTAAGAGCATTGCAAATAGCACACTTCCTATTGGGGGTTTATCTAGCAAGAACAAAAACTCCGGAGATTCTGCATCTGATAGCAAAAGCCACGAGGCGAGCCGATCCGACGAACGAGATCCATCATCGGCTTCGTCCGTGACCTTTGGATCACAGCAGCAGCCTTCAAGCTCTACCTTAAGCTTTGCCATCCCCATTAAGCAAGACCCATCGGATTACTGGTCCATCTTGGGGTACCATAATCCTACCCTCGACAACAGTGGGGTCAGGAACACTGCTGGTGTTACTACGACTTCTTTTGCATCTTCCAACAACAACGCAATACTAGTTATGAGAGCAGTGCTGGTTACGGCAACTGGATTGGACCTACCCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTTGGCATGGAATGAGCTCATGCACGAGGTAGGATGA 1407 0.5188 MDSSSSPPNNNNNNNSLAFSLSNHFPNPSSSHSTSPLSLFHSFTTYPSLTLTGSNTVDAPPEAAAGGGATNLSIFTAAPKFEDFLGGSAAAATTATGAPPQLPQFSAENNLYDSELKTTIAACFPRGFAAEPTTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELGEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKNSGDSASDSKSHEASRSDERDPSSASSVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPTLDNSGVRNTAGVTTTSFASSNNNAILVMRAVLVTATGLDLPCTHSNPMQNQVSFKRQYLAWNELMHEVG* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00609 468 Pfam AP2 domain 253 303 IPR001471 GO:0003700|GO:0006355
Lapu3g00609 468 Pfam AP2 domain 154 209 IPR001471 GO:0003700|GO:0006355
Lapu3g00609 468 ProSiteProfiles AP2/ERF domain profile. 253 311 IPR001471 GO:0003700|GO:0006355
Lapu3g00609 468 MobiDBLite consensus disorder prediction 326 376 - -
Lapu3g00609 468 CDD AP2 252 313 IPR001471 GO:0003700|GO:0006355
Lapu3g00609 468 FunFam AP2-like ethylene-responsive transcription factor ANT 153 219 - -
Lapu3g00609 468 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 372 - -
Lapu3g00609 468 ProSiteProfiles AP2/ERF domain profile. 154 217 IPR001471 GO:0003700|GO:0006355
Lapu3g00609 468 SMART rav1_2 253 317 IPR001471 GO:0003700|GO:0006355
Lapu3g00609 468 SMART rav1_2 154 223 IPR001471 GO:0003700|GO:0006355
Lapu3g00609 468 CDD AP2 153 219 IPR001471 GO:0003700|GO:0006355
Lapu3g00609 468 SUPERFAMILY DNA-binding domain 252 313 IPR016177 GO:0003677
Lapu3g00609 468 Gene3D AP2/ERF domain 253 313 IPR036955 GO:0003700|GO:0006355
Lapu3g00609 468 Gene3D AP2/ERF domain 154 219 IPR036955 GO:0003700|GO:0006355
Lapu3g00609 468 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Lapu3g00609 468 PRINTS Ethylene responsive element binding protein signature 155 166 IPR001471 GO:0003700|GO:0006355
Lapu3g00609 468 SUPERFAMILY DNA-binding domain 153 219 IPR016177 GO:0003677
Lapu3g00609 468 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g00609 468 MobiDBLite consensus disorder prediction 356 376 - -
Lapu3g00609 468 MobiDBLite consensus disorder prediction 340 355 - -
Lapu3g00609 468 FunFam AP2-like ethylene-responsive transcription factor 252 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00609 Lapu-Chr3 6313094 6316494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00609 99 398 AP2-EREBP Transcription Factor Family AT5G57390 68.308 5.82e-139 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lapu3g00609 AP2 5.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00609 K09285 - gmx:100797828 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00609 3 6313094 6316494 Lapu3g00609 3 6313094 6316494 ECH