Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00608 ATGGCTACAGATTCGTCTTTTGAGGGTCTTGCTCTTGATCCTTCCAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGGGAACTTGTATATGAAGTATCTAAGTGGTCTCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGACAAGAGATTTTGCAAATATTGTGTGCAGAGATGGGTAAAGAGAGAAAGTATACCGGCTTGACAAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGGCATGAAACTGCAATAGACCCTGAACCACATTCTTCTCCTGCATCTGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCACTTACCTGTTCCTGTGACCAGCATTTCAGTCAATAATGGTAGTGATTCTGTTAATACTACATACTGCAAAAACTCAGCTTGCAAAGCTACCCTTAATCAAGCAGATGCATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAGTATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAGCATGATGGTTCTGGAATTGGCAAAGATGGGGAGCGTCCCAGGCTCGATGGAGGCTTCTACTGTGTTGCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGTGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAGAGACTTTTACAAGGAACTGAAAAGTATGACGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGCCCACTCACTGGCTCACCGGTGAAGATTGGGAGGGGAATTGTGAACAGGCTTTCTTCAGGACCTGAGGTTCAGAAACAATGTGGTTTTGCTCTTGAATCACTTGATTTACTGCTGAAAAGGATCTTGCCATCATCATCCAATCCAACAACTCAAGATGCACATTTTCTGGCTCCAAATATGGTGAGGTTTGAAGATGTCACTGCCACATCCCTCACTATTATTTTGGGTTCCAAAGAACCCTCCGGTGAAAATATGGCTGCTTACACCTTGTGGTATCGCAAAGCTGATGATGTGGACTATCCCATGGATCCGACTTGCACCTCGCTCCTACCAAATAGAAGGTTCAGTTTGAGGGATCTACTTCCAGGTACAGAGTATAGTTTCAAAGTTGTCTCAAATGATTCGAGGGAGTCAGTTGTGTGTGAAGTTCAAATCTCAACAGAGCTTGGCGAGGATGAAGTCCATTGCTCAGCAACAGAGAGAAGTCAGAGCCCAGTAACAAACTGTAGCAGCCTTTCCAATCCGTCATCAGTGGAAGATGAAACTAATAACTGTAATCCATATAGTGACCTGACTGATAACCGAGCTGATCATTATCCTTCTTATCGCAAGGAAAGCGACCAGCTTGCTTCTGGAAATTTATCTAATGATGCTGTTAACTGTTCCAATATAGATGTTGTTGGTCTTCCTCCTGATGCAGATTCTTTGTCAGACAAGCAGCATGCTGTAGGAATGGCTGCCTCCATACCTAGTTCTGATGTGCTAAAGCTGGAAGACAAGCATTCGCCAGAGGAACAAGTCACTGAGGACATGAGCATTGATGATGGGTTGAATTCCCCAGTTCTAACGGGTAGGGAATGTGTGCCGCTTGTTGGTAGCTCGGAAGGAGGCTTGCCTAATACTCCCTGCAAGTTGGAAACACTTAAGGATGGACCAGGAAGGATTGGAAGATCCAAGTCCAGTGCCAAAGATCAAGAGAATGGATCTGGGAAAAGGGAGGGCCCCCAGGATGGAAGCACATCCAAGAAGAGAAGTGGAGAAAGGCAAGATGAGGGTCGTGTCACTAATGGCTTTTCGGAGCGTGATTTTGAGTATTATGTGAAGGTGATTAGGTGGCTAGAGTGTGAAGGGCACATAGAGAAAAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTAGACACCTTCTCAGAATGTATATCCAGCAAGAGAATATCAGTGGTGCCAGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2208 0.4352 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHETAIDPEPHSSPASGQKPAKRQRKSENPSHLPVPVTSISVNNGSDSVNTTYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIGKDGERPRLDGGFYCVACGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEKYDELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKQCGFALESLDLLLKRILPSSSNPTTQDAHFLAPNMVRFEDVTATSLTIILGSKEPSGENMAAYTLWYRKADDVDYPMDPTCTSLLPNRRFSLRDLLPGTEYSFKVVSNDSRESVVCEVQISTELGEDEVHCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTDNRADHYPSYRKESDQLASGNLSNDAVNCSNIDVVGLPPDADSLSDKQHAVGMAASIPSSDVLKLEDKHSPEEQVTEDMSIDDGLNSPVLTGRECVPLVGSSEGGLPNTPCKLETLKDGPGRIGRSKSSAKDQENGSGKREGPQDGSTSKKRSGERQDEGRVTNGFSERDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRISVVPAGFCMKLWH* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00608 735 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 735 IPR044514 GO:0010048|GO:0040029
Lapu3g00608 735 Gene3D Immunoglobulins 330 430 IPR013783 -
Lapu3g00608 735 MobiDBLite consensus disorder prediction 87 129 - -
Lapu3g00608 735 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Lapu3g00608 735 MobiDBLite consensus disorder prediction 446 498 - -
Lapu3g00608 735 SUPERFAMILY Fibronectin type III 345 420 IPR036116 GO:0005515
Lapu3g00608 735 MobiDBLite consensus disorder prediction 544 642 - -
Lapu3g00608 735 Pfam Fibronectin type III domain 345 420 IPR003961 GO:0005515
Lapu3g00608 735 MobiDBLite consensus disorder prediction 447 479 - -
Lapu3g00608 735 CDD FN3 345 426 IPR003961 GO:0005515
Lapu3g00608 735 CDD PHD_VIN3_plant 161 226 - -
Lapu3g00608 735 ProSiteProfiles Fibronectin type-III domain profile. 345 440 IPR003961 GO:0005515
Lapu3g00608 735 MobiDBLite consensus disorder prediction 598 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00608 Lapu-Chr3 6286920 6293082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00608 4 603 PHD Gene Family AT4G30200 47.975 2.44e-164 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00608 - - gmx:100819331 1360.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00608 3 6286920 6293082 Lapu3g00608 3 6286920 6293082 ECH