Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00605 ATGAGGTATATTCGGAGCAACAGCCTGAGGAGGCTCTTCTCCTTTGGGAGACGAGGTTCAAGGGAACACGTTCTGAGTCCTAACGGTGGAGAAAATCGTGAGACTCTTCCGTATAAAGAAGAACCTTCTGGAAGACCCTCTTGGAAATGCTTCTCTTATGAAGACTTGTTTGATGCCACAAATGGCTTCAGCCCAGAAAATTTGGTGGGAAAGGGAGGGTATGCGGAGGTTTACAAGGGAACATTGAATGGTGGTGAGGAAATTGCTGTGAAGAGACTCACAAGAACTTCGAGGGATGAGAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAATGTATTGCCTCTTCTGGGGTGTTGTATTGACAATGGCCTTTACCTTGTTTTTGAGCTATCTTCTAGAGGTTCTGTTGCATCTCTTCTTCATGATGAAAAATTGCCCCCTTTAGATTGGAAAACGAGGCATACGATAGCTATTGGAACTGCACGTGGCCTCCACTATTTGCATAAAGGCTGCAAGAGGAGGATAATCCACCGGGACATCAAGGCGTCAAACATTTTGTTAACAAAGGATTTTGAGCCACAGATATCTGATTTTGGACTAGCAAAGTGGCTTCCATCTCAATGGACTCATCATTCCATTGCCCCAATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGAGTTGTGGATGAGAAGACAGATGTGTTTGCCTTCGGTGTGTTCTTGCTAGAAGTAATCTCTGGAAGAAAACCAGTGGATGGGTCACACCAAAGCTTACACAGCTGGGCGAAACCAATTTTGAACAAGGGTGGGATTGAAGAGTTGGTAGATCCAAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAAAAGATTTGCCTTTGCTGCATCTCTCTGCATTCGGGCTTCTTCAACTTGGCGACCTACCATGACTGAGGTGTTAGAGATAATGGAAGAGGGAGAGACAGATATAGAAAAGTGGAAAATGCCAGAGGAAGAAGAAGAACAAGAGGAGGAGTTCTGGGGTTTTGAGGATCTGGAATATGAATATGATAGCTCCTTTTCAATGTCATTACTTGACTCCATTGGAAGTACTACTTAG 1140 0.4412 MRYIRSNSLRRLFSFGRRGSREHVLSPNGGENRETLPYKEEPSGRPSWKCFSYEDLFDATNGFSPENLVGKGGYAEVYKGTLNGGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSSRGSVASLLHDEKLPPLDWKTRHTIAIGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGGIEELVDPRLEGAYDVTQLKRFAFAASLCIRASSTWRPTMTEVLEIMEEGETDIEKWKMPEEEEEQEEEFWGFEDLEYEYDSSFSMSLLDSIGSTT* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00605 379 Gene3D Transferase(Phosphotransferase) domain 1 141 355 - -
Lapu3g00605 379 Pfam Protein tyrosine and serine/threonine kinase 67 270 IPR001245 GO:0004672|GO:0006468
Lapu3g00605 379 CDD STKc_IRAK 69 332 - -
Lapu3g00605 379 MobiDBLite consensus disorder prediction 21 43 - -
Lapu3g00605 379 SMART serkin_6 63 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00605 379 PANTHER OS08G0249100 PROTEIN 41 359 IPR046958 -
Lapu3g00605 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Lapu3g00605 379 ProSiteProfiles Protein kinase domain profile. 63 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00605 379 FunFam Putative receptor-like serine/threonine-protein kinase 31 139 - -
Lapu3g00605 379 Gene3D Phosphorylase Kinase; domain 1 37 139 - -
Lapu3g00605 379 FunFam Putative receptor-like serine/threonine-protein kinase 141 355 - -
Lapu3g00605 379 SUPERFAMILY Protein kinase-like (PK-like) 38 330 IPR011009 -
Lapu3g00605 379 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00605 Lapu-Chr3 6252324 6258085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00605 51 331 Trihelix Transcription Factor Family AT1G70460 44.828 3.62e-71 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lapu3g00605 PK_Tyr_Ser-Thr 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00605 - - gmx:100305398 695.271