Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00601 ATGGCTGCTGATAAAGCAGCAATCACCCTCGACCAAATCAAGAATGAGACTGTTGATCTGGAACGTATTCCTATTGAGGAAGTGTTCCAGCAACTGAAATGTTCCAGAGAAGGACTGTCCTCGGACGAAGGAGCCAATCGGCTTCAAATATTTGGGCCCAACAAGCTCGAGGAGAAAAAGGAAAGCAAATTACTCAAGTTTCTTGGGTTTATGTGGAACCCTCTATCATGGGTGATGGAAGCTGCAGCTATTATGGCAATTGCTCTTGCAAATGGGGATGGGAGACCCCCAGATTGGCAAGATTTTGTGGGTATTGTGTGCTTGTTGCTGATCAACTCCACCATCAGTTTCATTGAAGAAAATAATGCTGGTAATGCAGCTGCTGCTCTTATGGCTGGTCTTGCTCCCAAGACAAAGGTTCTTAGAGATGGTAAATGGACTGAGCAAGAAGCTGCTATTCTAGTTCCAGGCGACATCATAAGCATCAAACTAGGTGATATAATTCCTGCTGATGCTCGTCTTCTCGAGGGTGATCCTTTGAAGGTTGATCAATCCGCCTTGACTGGAGAGTCACTTCCGGCTACCAAGGGTCCTGGAGATGAAGTTTTCTCTGGCTCAACTTGTAAGCAAGGAGAAATTGAAGCTGTTGTCATTGCAACTGGTGTCCACACATTTTTTGGGAAAGCAGCTCACCTGGTGGATAGTACCAACCAAGTTGGACATTTCCAGAAAGTGCTTACAGCAATTGGAAACTTCTGTATTTGTTCCATTGCCATTGGTATGTTGGCTGAGATCATAGTCATGTACCCGATTCAGCACCGCAAGTACAGAGATGGAATTGACAACCTTCTTGTCCTCTTGATTGGAGGAATTCCCATTGCTATGCCCACTGTGTTGTCTGTGACAATGGCCATTGGTTCTCACAGGCTTTCTAAGCAGGGTGCTATCACGAAGAGAATGACCGCCATTGAAGAAATGGCGGGTATGGATGTCCTTTGCAGTGACAAGACAGGTACACTCACCCTTAACAAGTTGAGTGTTGACAAGAACTTGATCGAGGTCTTTGCAAAGGGTGTCGACAAGGATCATGTGATCCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAGGATGCAATAGATGCTGCCATTGTTGGAATGCTTGCTGATCCAAAAGAGGCAAGGGCTGGGGTAAGAGAAGTGCATTTCTTACCATTTAATCCCGTTGACAAGAGAACTGCTTTGACTTACATTGATGCCGATGATAATTGGCACCGTGCAAGCAAAGGTGCTCCTGAGCAGATCATGACCCTGTGTAACCTCAGGGAAGATGCAAAGAGGAAGGTTCATGGTATTATTGACAAGTTTGCAGAGAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCAGAGAAAACAAAAGAAAGCGCTGGCAGTCCATGGCAGTTTGTCGGTTTGTTGTCACTGTTCGACCCTCCTAGACATGACAGTGCTGAAACTATCCGTAGAGCTCTTCATCTTGGTGTAAATGTCAAGATGATTACTGGGGATCAACTAGCCATAGCTAAGGAGACTGGACGAAGACTGGGGATGGGAACTAATATGTACCCATCTGCTTCCTTGCTTGGTCAAGACAAAGATGCAAGTATTGCTGCTCTTCCAGTGGAAGAGCTGATTGAGAAGGCAGATGGTTTTGCTGGAGTATTTCCAGAGCACAAGTATGAAATTGTCAAGAAGTTGCAAGATAGGAAGCACATCTGTGGAATGACTGGAGATGGTGTCAATGACGCTCCTGCTTTGAAGAAAGCCGATATTGGAATCGCTGTTGCTGATGCAACAGATGCTGCAAGAAGTGCTTCTGATATTGTATTGACAGAACCTGGTTTGAGTGTTATTATTAGTGCCGTCTTAACTAGCAGGGCTATTTTCCAGAGAATGAAAAACTACACGATATATGCAGTATCTATCACTATCCGCATAGTGTTTGGCTTCATGTTCATAGCATTGATCTGGAAGTTCGACTTTTCTCCTTTCATGGTTTTGATCATTGCCATTCTAAATGATGGAACAATCATGACAATCTCAAAGGACAGAGTGAAGCCATCTCCCTTGCCTGATAGCTGGAAACTGCAAGAAATATTTGCTACTGGGGTTGTGCTTGGAAGTTACTTGGCACTGATGACTATCATATTCTTCTGGGCAATGAGCGAAACTGATTTCTTCCCTGAAAAATTTGGAGTTCGACACCTGATTCATGATGAAATGATGTCTGCTTTGTATTTACAAGTCAGTATAGTCAGCCAGGCTCTGATATTTGTTACGCGTTCTCGAAGCTGGTCCTTTGTTGAACGCCCTGGAATGCTGTTAGTTATCGCTTTCATTATTGCACAGTTTGTTGCTACAGTCATAGCAGTGTATGCTGACTGGAGCTTTGCAAAGGTGAAAGGAATTGGTTGGGGTTGGGCAGGAGTCATCTGGCTATACAGTATTGTCTTCTATTTTCCACTTGACCTTATGAAGTTTGCCATCCGTTACATATTGAGTGGCAAGGCTTGGCTAAACCTGCTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTTCGGTAAGGAGGAGAGGGAAGCTCAGTGGGCTCATGCTCAGAGGACCCTGCATGGACTTCAACCAGCAGAAACTACTAGCATTTTCAATGAGAAGAACAATTATAGAGAACTCTCAGAGATTGCGGAGCAGGCCATGAAAAGAGCTGAAGTTGCAAGGCTTCGCGAGCTTCACACACTGAAAGGACATGTTGAGTCGGTGGTGAAGCTGAAGGGTTTGGACATTGATAACATCCAGCAGCACTACACGGTGTGA 2862 0.449 MAADKAAITLDQIKNETVDLERIPIEEVFQQLKCSREGLSSDEGANRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGDGRPPDWQDFVGIVCLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPATKGPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKDHVILLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDADDNWHRASKGAPEQIMTLCNLREDAKRKVHGIIDKFAERGLRSLAVARQEVPEKTKESAGSPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLQEIFATGVVLGSYLALMTIIFFWAMSETDFFPEKFGVRHLIHDEMMSALYLQVSIVSQALIFVTRSRSWSFVERPGMLLVIAFIIAQFVATVIAVYADWSFAKVKGIGWGWAGVIWLYSIVFYFPLDLMKFAIRYILSGKAWLNLLENKTAFTTKKDFGKEEREAQWAHAQRTLHGLQPAETTSIFNEKNNYRELSEIAEQAMKRAEVARLRELHTLKGHVESVVKLKGLDIDNIQQHYTV* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00601 953 SUPERFAMILY Calcium ATPase, transduction domain A 136 233 IPR008250 -
Lapu3g00601 953 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Lapu3g00601 953 FunFam Plasma membrane ATPase 345 492 - -
Lapu3g00601 953 Gene3D - 345 492 IPR023299 GO:0000166
Lapu3g00601 953 SFLD p-type atpase 315 643 IPR044492 -
Lapu3g00601 953 Pfam haloacid dehalogenase-like hydrolase 329 606 - -
Lapu3g00601 953 SFLD Haloacid Dehalogenase 315 643 - -
Lapu3g00601 953 Coils Coil 901 924 - -
Lapu3g00601 953 FunFam Plasma membrane ATPase 136 220 - -
Lapu3g00601 953 Gene3D - 902 953 - -
Lapu3g00601 953 Gene3D - 98 817 - -
Lapu3g00601 953 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00601 953 PRINTS H+-transporting ATPase (proton pump) signature 762 783 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00601 953 PRINTS H+-transporting ATPase (proton pump) signature 564 580 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00601 953 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00601 953 PRINTS H+-transporting ATPase (proton pump) signature 623 648 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00601 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 849 IPR023298 -
Lapu3g00601 953 Gene3D - 136 220 - -
Lapu3g00601 953 Pfam Cation transporter/ATPase, N-terminus 23 85 IPR004014 -
Lapu3g00601 953 Gene3D - 330 629 IPR023214 -
Lapu3g00601 953 FunFam Plasma membrane ATPase 484 640 - -
Lapu3g00601 953 NCBIfam HAD-IC family P-type ATPase 105 356 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00601 953 NCBIfam HAD-IC family P-type ATPase 567 681 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00601 953 Pfam E1-E2 ATPase 135 313 - -
Lapu3g00601 953 PRINTS P-type cation-transporting ATPase superfamily signature 487 498 - -
Lapu3g00601 953 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Lapu3g00601 953 PRINTS P-type cation-transporting ATPase superfamily signature 183 197 - -
Lapu3g00601 953 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Lapu3g00601 953 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Lapu3g00601 953 PRINTS P-type cation-transporting ATPase superfamily signature 509 519 - -
Lapu3g00601 953 FunFam ATPase 4 plasma membrane-type 578 817 - -
Lapu3g00601 953 NCBIfam plasma-membrane proton-efflux P-type ATPase 38 808 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lapu3g00601 953 CDD P-type_ATPase_H 38 843 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lapu3g00601 953 PANTHER CALCIUM-TRANSPORTING ATPASE 21 885 - -
Lapu3g00601 953 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Lapu3g00601 953 SUPERFAMILY HAD-like 329 639 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00601 Lapu-Chr3 6192784 6199933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00601 10 953 Primary Pumps ATPases AT5G57350 85.729 0.0 1638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00601 K01535 - gmx:100816905 1758.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00601 3 6192784 6199933 Lapu9g00494 9 5542853 5551798 PCT