Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00588 ATGGAGAAGAGTAAAAAATTGCAGAAAAGTTACTTTGATGTGTTGGGTCTGTGCTGCTCCTCTGAAGTGCCACTCATTGAAAATATCTTGAAGCCTCTTGAAGGAATCAAAGAGGTTTCTGTCATAGTCCCTTCTCGAACTGTCATTGTTCTCCATGATACTCTTCTCATTTCGCAACTTCAAATCGTTAAGGCACTGAATCAAGCAAGATTGGAGGCGAATATCAGAGTGCATGGAGATGAGAACCACAAGAAGAGATGGCCAAGCCCTTTCTCAATTGCATCTGGTGTTTTACTTTTGCTTTCATTTCTGAAATTTGTGTACCATCCCTTCAAGTATTTAGCACTTGCTGCAGTCGCTGCCGGTGTCTACCCTATCATTCTAAAGGCCATTGTCTCCATTCGGAATCTTAGGATTGACATCAGCATTCTCATGATCATAGCAGTTATTGGGACAATTGCTATGGATGATTATTTGGAAGCTGGAACCATCGTTTTCCTCTTCTCAATTGCAGAATGGCTAGAATCAAGGGCAAGTCACAAGGCAAATGCAGCAATGTCATCTTTGATGAACATAGCCCCTCAAAAAGCAGTCATAGCTGAAACAGGAGAGGTTGTGGATGCTGATGAGGTGAAAGTGAACACCGTTTTAGCTGTTAAAGCAGGGGAGGTGATACCCATTGATGGAGTTGTTGTAGATGGAACCTGTGAAGTTGACGAGAAAACTTTGACCGGAGAATCATTCCCTGTGGCAAAACAAAAGGACTCTACTGTATGGGCTGGCACCATCAATTTAAATGGTTATATTAGTGTGAAAACTACTGAACTGGCTGAAGACTGTGTGGTGGCTAAAATGACAAAGCTTGTGGAAGAAGCTCAAAACAGCAAAACCAGCGTTCAGAGATTGATAGACAAATTTGTCAAGTTTTATACCCCTGCCGTTGTAATCATATCAACCCTTGTAGCGGTGATTCCAGTTGCGTTAAAATCACGTGAAGAGAAATACTGGCTTCACTCGGCGTTGGTTGTTTTAGTAAGTGCATGTCCATGTGCACTCATCCTTTCAACGCCAGTTGCAACCTTTTGTGCTTACACCAGAGCAGCCACATCAGGTCTTCTCATCAAAGGGGGTCATCATCTTGAAACACTTGCAAAAATCAAGATCATGGCCTTTGACAAAACGGGTACCATAACGAAGGGTGAATTTGTGGTCACACAGTTTCAATCTCTTTCAGCTGACATAGATTTGAACACATTGCTTTACTGGGTGTCAAGTGTAGAGAGCAAGTCAAGCCATCCAATGGCAGCTGCGATTGTTGATTATGGAAGGTCTCTCTCGGTTCAACCAGATCCAGAAAAGGTGACAGAATTCGAAAACTTCCCGGGGGAAGGAATTTGTGGAAAAATGGAAGACAGAGTTGTTTACATCGGAAATAAAAAAATTGCCGCAAGAGCCGGGTCAGAAACAGTTCCAATCTTACAAGGAGAAATTGCAAGAGGAAAGACCACTGGATACATATACTTGGGAGCAACCCCAGTTGGATTTTTCTCTCTTTCAGATGTTTGCAGGTTAGGGGTTCAGGAAGCAATTGGGCAGTTGAAGTCATTAGGAATCAAAACAGCTATGCTCACTGGAGATAGTGAATCTGCTGCAATGCAAGCACAGGAGCAGTTGGGGCATTCTCTGGAGTTAGTCCATGCAGAACTTTTGCCAGAAGACAAGGTGAAAATCGTCTCAGAATTTAAGAAGGAAGGTCCAACAGCCATGATTGGAGATGGTATAAACGATGCGCCGGCATTAGCTTCAGCCGATATTGGAATCTCAATGGGCATTTCAGGTTCTGCATTGGCAAGTGAGACAGGCAATATAATTCTTATGTCAAATGACATTAGGAAGATACCAGAGGCCATTAAGCTTGCAAGAAAAACACGTTGGAAGGTGCTAGAAAACATTATTTTGTCAATCACTACAAAGGCTGCGATTATTGGTTTGGCCATTGGTGGTTATCCATTAGTTTGGGCAGCAGTTGTTGCTGATGTTGGAACGTGTTTATTGGTCATCTTGAACAGCATGTTACTTCTTCGAAGAGGACACAAGCATGTAGGAAAATCTTGTAGATCTTCCACTAAATCACATAACCACAAAAGTGGATGTGGTGGCGCTCATGACCATGATCATGCTCACCATCAACATCAACATCAACATTGTCATGATCATAAACATGATGACGGTCACCATCAACATGAACATGATCACCATCAACATGAACATGATCACCATCAACATGAACATGATCACCATCAACATGAGCATGATGAACATCATCACCACAATCAACATGAACATGAGCATGATCACCATCACCATCATAGCCATAAGATAGATAACATTTCTCAACGTCAGAAATGTGGTGGCACTCATGTTAGTTCCTCTCATCATCATCATCATCATCAAAAACATCAACATGAGCATGACGAACATCATCACCACAATCAACATGAACATCATAGCTGTAATCATCATGACCATCAAAATTATAGCCATAATCAGGTTGATCAACATCAACATCCTCAAAAGTGTGCCTCCTCCCAGACGAGTTCTTCAATTGTTAACCATTGTAACACCACGAAGGGTCATGATCTATGTAAAAGCAATGAATTCCATGAACATGATCACTGTCATCATGGAAGATGTGACAAGAATCAGGATGAAGTCCAGAAGCATGATATGGAACACCATGGTCGTTCGAATTCAAGTTGTTTGATTCTTGATTCTAAAGATAATCATGCAGTTGCAACAAACAGCCATGGTAATTGTTTGGGACATCAGGCTCATGGGACAAAACACTGCCACAACCAACATGTTGTTGCTCTTGACGGAGTTTCATTTAGTTCTTCTTACCATCCCCATCTCACTTGTCAAAAGGAGAGCCAGCATCAAACCAATAACCATTGCCACCCCATCCCTGGTTGTGAAAACCTGAAAGATCATAAATACAGAAATGTTCTACATTCTAATCAAGACACGCATCAGAAAAAGTCAGGTTACAATTCAGACATTGAGAAGAATGGGACAGGTGAAATATCCGTTGACATCGTTGAACATGTTGAATTAGCCCCAATGCATGGTTGTTCAAGTTTGGCAGAGAAAGAGAAAGATTCCTGCTGTGAAGGCTGCTCAGACGCATGCGAGAATTTGCCTACTGTGTGTGGTTGTGAGAGTTCAAACGAGAGAGAAGATAGTGCATGTTGCAGAAATGAATGCTCTTCAAAAGAATGCAAGGAATCTCCAATTATGCATGTTTGTCTTGGTTTGGATAAGAGAGAATTTGGTGGATGTTGCAAGAGCTACATGAAGGAATGCTGTGGCAAACTTGGACACTCAAGAGCTGGTTTTGTTGGAGGTTTGTCAGAAATTATGACAGAATAG 3429 0.4179 MEKSKKLQKSYFDVLGLCCSSEVPLIENILKPLEGIKEVSVIVPSRTVIVLHDTLLISQLQIVKALNQARLEANIRVHGDENHKKRWPSPFSIASGVLLLLSFLKFVYHPFKYLALAAVAAGVYPIILKAIVSIRNLRIDISILMIIAVIGTIAMDDYLEAGTIVFLFSIAEWLESRASHKANAAMSSLMNIAPQKAVIAETGEVVDADEVKVNTVLAVKAGEVIPIDGVVVDGTCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYISVKTTELAEDCVVAKMTKLVEEAQNSKTSVQRLIDKFVKFYTPAVVIISTLVAVIPVALKSREEKYWLHSALVVLVSACPCALILSTPVATFCAYTRAATSGLLIKGGHHLETLAKIKIMAFDKTGTITKGEFVVTQFQSLSADIDLNTLLYWVSSVESKSSHPMAAAIVDYGRSLSVQPDPEKVTEFENFPGEGICGKMEDRVVYIGNKKIAARAGSETVPILQGEIARGKTTGYIYLGATPVGFFSLSDVCRLGVQEAIGQLKSLGIKTAMLTGDSESAAMQAQEQLGHSLELVHAELLPEDKVKIVSEFKKEGPTAMIGDGINDAPALASADIGISMGISGSALASETGNIILMSNDIRKIPEAIKLARKTRWKVLENIILSITTKAAIIGLAIGGYPLVWAAVVADVGTCLLVILNSMLLLRRGHKHVGKSCRSSTKSHNHKSGCGGAHDHDHAHHQHQHQHCHDHKHDDGHHQHEHDHHQHEHDHHQHEHDHHQHEHDEHHHHNQHEHEHDHHHHHSHKIDNISQRQKCGGTHVSSSHHHHHHQKHQHEHDEHHHHNQHEHHSCNHHDHQNYSHNQVDQHQHPQKCASSQTSSSIVNHCNTTKGHDLCKSNEFHEHDHCHHGRCDKNQDEVQKHDMEHHGRSNSSCLILDSKDNHAVATNSHGNCLGHQAHGTKHCHNQHVVALDGVSFSSSYHPHLTCQKESQHQTNNHCHPIPGCENLKDHKYRNVLHSNQDTHQKKSGYNSDIEKNGTGEISVDIVEHVELAPMHGCSSLAEKEKDSCCEGCSDACENLPTVCGCESSNEREDSACCRNECSSKECKESPIMHVCLGLDKREFGGCCKSYMKECCGKLGHSRAGFVGGLSEIMTE* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00588 1142 ProSitePatterns E1-E2 ATPases phosphorylation site. 392 398 IPR018303 -
Lapu3g00588 1142 PRINTS P-type cation-transporting ATPase superfamily signature 239 253 - -
Lapu3g00588 1142 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Lapu3g00588 1142 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Lapu3g00588 1142 PRINTS P-type cation-transporting ATPase superfamily signature 536 546 - -
Lapu3g00588 1142 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Lapu3g00588 1142 MobiDBLite consensus disorder prediction 781 795 - -
Lapu3g00588 1142 Gene3D - 381 641 IPR023214 -
Lapu3g00588 1142 SFLD p-type atpase 373 643 IPR044492 -
Lapu3g00588 1142 Pfam haloacid dehalogenase-like hydrolase 386 604 - -
Lapu3g00588 1142 SUPERFAMILY Calcium ATPase, transmembrane domain M 142 384 IPR023298 -
Lapu3g00588 1142 FunFam Putative cadmium/zinc-transporting ATPase 3 4 77 - -
Lapu3g00588 1142 MobiDBLite consensus disorder prediction 825 849 - -
Lapu3g00588 1142 FunFam Copper-transporting ATPase 1, putative 179 293 - -
Lapu3g00588 1142 ProSiteProfiles Heavy-metal-associated domain profile. 8 74 IPR006121 GO:0046872
Lapu3g00588 1142 FunFam Putative cadmium/zinc-transporting ATPase 3 401 522 - -
Lapu3g00588 1142 NCBIfam heavy metal translocating P-type ATPase 142 693 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lapu3g00588 1142 MobiDBLite consensus disorder prediction 807 824 - -
Lapu3g00588 1142 MobiDBLite consensus disorder prediction 736 780 - -
Lapu3g00588 1142 SUPERFAMILY HAD-like 390 691 IPR036412 -
Lapu3g00588 1142 MobiDBLite consensus disorder prediction 702 863 - -
Lapu3g00588 1142 NCBIfam HAD-IC family P-type ATPase 164 670 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00588 1142 NCBIfam cadmium family heavy metal-translocating P-type ATPase 141 482 - -
Lapu3g00588 1142 Gene3D - 401 522 IPR023299 GO:0000166
Lapu3g00588 1142 Pfam E1-E2 ATPase 200 368 - -
Lapu3g00588 1142 SUPERFAMILY Calcium ATPase, transduction domain A 204 289 IPR008250 -
Lapu3g00588 1142 CDD P-type_ATPase_HM 93 692 - -
Lapu3g00588 1142 Gene3D - 3 77 - -
Lapu3g00588 1142 PRINTS Copper-transporting ATPase signature 312 326 - -
Lapu3g00588 1142 PRINTS Copper-transporting ATPase signature 625 639 - -
Lapu3g00588 1142 PRINTS Copper-transporting ATPase signature 568 585 - -
Lapu3g00588 1142 PRINTS Copper-transporting ATPase signature 181 199 - -
Lapu3g00588 1142 ProSitePatterns Hypothetical cof family signature 2. 590 612 - -
Lapu3g00588 1142 SUPERFAMILY HMA, heavy metal-associated domain 6 74 IPR036163 GO:0046872
Lapu3g00588 1142 Gene3D - 178 293 - -
Lapu3g00588 1142 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 696 - -
Lapu3g00588 1142 SFLD C1.7: P-type atpase like 373 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00588 Lapu-Chr3 6046990 6057222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00588 4 916 Primary Pumps ATPases AT4G30110 57.173 0.0 1039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00588 K01534 - gmx:100817567 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00588 3 6046990 6057222 Lapu3g00588 3 6046990 6057222 ECH