Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00580 ATGGCCGTTTTGAGTACTTGGGGTATTTCGTTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGTTCATTTGAAGGCACGTACGAAAGGGAAGAAGGATAAAGTGAAAGTGGAATCAAAATCTCACACAAAAAATGTTGGCACTGACGTACCAAGGAAGAGAGTTATCTCTTCCCTTAAGATCAAAGGGCCACGTAAGGATTCTTCAGATAAGAAACTGATTACTGGACAAAAATTGCCTTTGAAGAACAGAAAATCTTCACTGAAGCCATCCTCAAAGTTACAAGGCAAAAAGGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAAATGCTGATGGGGGGGAGGTAAAGCTTCAAAAAGTGAAGAGAAAGAGAAAGAAGAAAAGACAGAGGAATAACTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAACACGATATCTTTTAATCAAAATGAAGCTAGAACAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCGGAAAAGGAGCTACAAAGAGCAAGGAAGCAGATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAGTTGGATTCTCTTGGTTCATTGAGTAGCATTGAAGATTCTGCCATCGCTCCAGATGGATCTGGTTGTCATGAACATATATTCTGTGCTAAGTGCAAAATCCGTGAAGAACCTCCAGATAATGATGTTATACGATGCCATGGTACATGCAAGCGTGCTTTTCACCAAAAGTGTGTGGACCCTCCTTTAGACACTGAAAATGTTCCTCCTGGAGAGCAGGACTGGTTTTGTAAATTTTGTGAATGTAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATACCTGATGGTGAGACTGCATTACTGAATCCTGAAGAAGAATGGCCGTCGGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATTAACATAGAAGGAACTAATGATAGTGCATCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCTGATGATGAATATTCTCCAGTAGATGATGTCAGTCGTGAATATCTTTTTGTCAATAGCAGCATAGATTCTGATGAATCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGCAACTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAGGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGAATAGGTGCCCCAATAATGAGCACAACAACATGACAAGAAAAGATTCTTCGAGCATAAATATCAAAAGGCATTGTTTTAGGATTCCGCATGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGAGAATGAACTTCCTCCAAGATCTATTAGAGAGGAACTTTCTAAAGAGCTGGGACTTGACACCGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCTCTTAAAAACAGAAAGCATCAAGCAGAAGGAGCAGAAAATCAACACAAGGGAATCACTTCCTCAAAGAACTCCAGATTACAAAATCAGGAGAAGGCTGATCTTTTGAAACCAAAGACCTTGAAAATTACTACAAGTCATTCCCAGAAGGATGTTAAAAATGTCACTGGAAGAGAGAAAATGAAGTTATCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCTCCAGGAGAAAACGGCAACAAGGATTCCATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAGAAAGAAGAGGTTGGTAAATTTTACATTTGAAGGAGATTCTCAGACGGCAGAGTTGGAATTTGAAAGACTATGCAAATTGAAGCGAAAACTAGTTAGTATGAAGCAAAAATTAACTACAATTCAAAGTTTCAGAGTAAAGGGTTCAGATGAAGCCCATTCTAATGAACCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAAATTGAATGA 2127 0.3996 MAVLSTWGISLKKSNDKGSKKSVHLKARTKGKKDKVKVESKSHTKNVGTDVPRKRVISSLKIKGPRKDSSDKKLITGQKLPLKNRKSSLKPSSKLQGKKASLSSRKEGKNADGGEVKLQKVKRKRKKKRQRNNLDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSSIEDSAIAPDGSGCHEHIFCAKCKIREEPPDNDVIRCHGTCKRAFHQKCVDPPLDTENVPPGEQDWFCKFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETALLNPEEEWPSDDSEDDDYDPERKEDSHNINIEGTNDSASDDLSSSTSLCYSDDEYSPVDDVSREYLFVNSSIDSDESEDKACGRRQRKAVDYKQLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENRCPNNEHNNMTRKDSSSINIKRHCFRIPHDSVEKLRQVFAENELPPRSIREELSKELGLDTEKVSKWFKNARYLALKNRKHQAEGAENQHKGITSSKNSRLQNQEKADLLKPKTLKITTSHSQKDVKNVTGREKMKLSSKKRQPEIPPPPGENGNKDSMEISDDVSLKKLLKKRKKRLVNFTFEGDSQTAELEFERLCKLKRKLVSMKQKLTTIQSFRVKGSDEAHSNEPSIVYVPTAVLREKIE* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00580 708 SMART PHD_3 229 282 IPR001965 -
Lapu3g00580 708 MobiDBLite consensus disorder prediction 589 604 - -
Lapu3g00580 708 MobiDBLite consensus disorder prediction 81 99 - -
Lapu3g00580 708 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 13 706 - -
Lapu3g00580 708 FunFam pathogenesis-related homeodomain protein 483 547 - -
Lapu3g00580 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 293 IPR013083 -
Lapu3g00580 708 ProSiteProfiles Zinc finger PHD-type profile. 227 284 IPR019787 -
Lapu3g00580 708 Gene3D - 484 558 - -
Lapu3g00580 708 Pfam Homeodomain 492 536 IPR001356 GO:0003677
Lapu3g00580 708 MobiDBLite consensus disorder prediction 326 340 - -
Lapu3g00580 708 SUPERFAMILY Homeodomain-like 484 546 IPR009057 -
Lapu3g00580 708 MobiDBLite consensus disorder prediction 32 50 - -
Lapu3g00580 708 SUPERFAMILY FYVE/PHD zinc finger 221 287 IPR011011 -
Lapu3g00580 708 CDD PHD_PRHA_like 229 281 IPR045876 -
Lapu3g00580 708 Pfam PHD-finger 229 284 IPR019787 -
Lapu3g00580 708 MobiDBLite consensus disorder prediction 352 373 - -
Lapu3g00580 708 SMART HOX_1 483 545 IPR001356 GO:0003677
Lapu3g00580 708 ProSitePatterns Zinc finger PHD-type signature. 230 281 IPR019786 -
Lapu3g00580 708 ProSiteProfiles 'Homeobox' domain profile. 481 541 IPR001356 GO:0003677
Lapu3g00580 708 MobiDBLite consensus disorder prediction 1 139 - -
Lapu3g00580 708 MobiDBLite consensus disorder prediction 541 624 - -
Lapu3g00580 708 CDD homeodomain 484 545 IPR001356 GO:0003677
Lapu3g00580 708 MobiDBLite consensus disorder prediction 321 376 - -
Lapu3g00580 708 MobiDBLite consensus disorder prediction 100 119 - -
Lapu3g00580 708 MobiDBLite consensus disorder prediction 551 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00580 Lapu-Chr3 5936885 5941820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00580 132 546 Homeobox Transcription Factor Family AT4G29940 56.501 1.43e-147 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lapu3g00580 Homeodomain 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00580 - - gmx:100817639 1094.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00580 3 5936885 5941820 Lapu3g00580 3 5936885 5941820 ECH
Lapu3g00580 3 5936885 5941820 Lapu9g00470 9 5172396 5179135 PCT