Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu3g00580 | ATGGCCGTTTTGAGTACTTGGGGTATTTCGTTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGTTCATTTGAAGGCACGTACGAAAGGGAAGAAGGATAAAGTGAAAGTGGAATCAAAATCTCACACAAAAAATGTTGGCACTGACGTACCAAGGAAGAGAGTTATCTCTTCCCTTAAGATCAAAGGGCCACGTAAGGATTCTTCAGATAAGAAACTGATTACTGGACAAAAATTGCCTTTGAAGAACAGAAAATCTTCACTGAAGCCATCCTCAAAGTTACAAGGCAAAAAGGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAAATGCTGATGGGGGGGAGGTAAAGCTTCAAAAAGTGAAGAGAAAGAGAAAGAAGAAAAGACAGAGGAATAACTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAACACGATATCTTTTAATCAAAATGAAGCTAGAACAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCGGAAAAGGAGCTACAAAGAGCAAGGAAGCAGATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAGTTGGATTCTCTTGGTTCATTGAGTAGCATTGAAGATTCTGCCATCGCTCCAGATGGATCTGGTTGTCATGAACATATATTCTGTGCTAAGTGCAAAATCCGTGAAGAACCTCCAGATAATGATGTTATACGATGCCATGGTACATGCAAGCGTGCTTTTCACCAAAAGTGTGTGGACCCTCCTTTAGACACTGAAAATGTTCCTCCTGGAGAGCAGGACTGGTTTTGTAAATTTTGTGAATGTAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATACCTGATGGTGAGACTGCATTACTGAATCCTGAAGAAGAATGGCCGTCGGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATTAACATAGAAGGAACTAATGATAGTGCATCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCTGATGATGAATATTCTCCAGTAGATGATGTCAGTCGTGAATATCTTTTTGTCAATAGCAGCATAGATTCTGATGAATCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGCAACTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAGGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGAATAGGTGCCCCAATAATGAGCACAACAACATGACAAGAAAAGATTCTTCGAGCATAAATATCAAAAGGCATTGTTTTAGGATTCCGCATGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGAGAATGAACTTCCTCCAAGATCTATTAGAGAGGAACTTTCTAAAGAGCTGGGACTTGACACCGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCTCTTAAAAACAGAAAGCATCAAGCAGAAGGAGCAGAAAATCAACACAAGGGAATCACTTCCTCAAAGAACTCCAGATTACAAAATCAGGAGAAGGCTGATCTTTTGAAACCAAAGACCTTGAAAATTACTACAAGTCATTCCCAGAAGGATGTTAAAAATGTCACTGGAAGAGAGAAAATGAAGTTATCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCTCCAGGAGAAAACGGCAACAAGGATTCCATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAGAAAGAAGAGGTTGGTAAATTTTACATTTGAAGGAGATTCTCAGACGGCAGAGTTGGAATTTGAAAGACTATGCAAATTGAAGCGAAAACTAGTTAGTATGAAGCAAAAATTAACTACAATTCAAAGTTTCAGAGTAAAGGGTTCAGATGAAGCCCATTCTAATGAACCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAAATTGAATGA | 2127 | 0.3996 | MAVLSTWGISLKKSNDKGSKKSVHLKARTKGKKDKVKVESKSHTKNVGTDVPRKRVISSLKIKGPRKDSSDKKLITGQKLPLKNRKSSLKPSSKLQGKKASLSSRKEGKNADGGEVKLQKVKRKRKKKRQRNNLDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSSIEDSAIAPDGSGCHEHIFCAKCKIREEPPDNDVIRCHGTCKRAFHQKCVDPPLDTENVPPGEQDWFCKFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETALLNPEEEWPSDDSEDDDYDPERKEDSHNINIEGTNDSASDDLSSSTSLCYSDDEYSPVDDVSREYLFVNSSIDSDESEDKACGRRQRKAVDYKQLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENRCPNNEHNNMTRKDSSSINIKRHCFRIPHDSVEKLRQVFAENELPPRSIREELSKELGLDTEKVSKWFKNARYLALKNRKHQAEGAENQHKGITSSKNSRLQNQEKADLLKPKTLKITTSHSQKDVKNVTGREKMKLSSKKRQPEIPPPPGENGNKDSMEISDDVSLKKLLKKRKKRLVNFTFEGDSQTAELEFERLCKLKRKLVSMKQKLTTIQSFRVKGSDEAHSNEPSIVYVPTAVLREKIE* | 709 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu3g00580 | 708 | SMART | PHD_3 | 229 | 282 | IPR001965 | - | |
Lapu3g00580 | 708 | MobiDBLite | consensus disorder prediction | 589 | 604 | - | - | |
Lapu3g00580 | 708 | MobiDBLite | consensus disorder prediction | 81 | 99 | - | - | |
Lapu3g00580 | 708 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 13 | 706 | - | - | |
Lapu3g00580 | 708 | FunFam | pathogenesis-related homeodomain protein | 483 | 547 | - | - | |
Lapu3g00580 | 708 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 293 | IPR013083 | - | |
Lapu3g00580 | 708 | ProSiteProfiles | Zinc finger PHD-type profile. | 227 | 284 | IPR019787 | - | |
Lapu3g00580 | 708 | Gene3D | - | 484 | 558 | - | - | |
Lapu3g00580 | 708 | Pfam | Homeodomain | 492 | 536 | IPR001356 | GO:0003677 | |
Lapu3g00580 | 708 | MobiDBLite | consensus disorder prediction | 326 | 340 | - | - | |
Lapu3g00580 | 708 | SUPERFAMILY | Homeodomain-like | 484 | 546 | IPR009057 | - | |
Lapu3g00580 | 708 | MobiDBLite | consensus disorder prediction | 32 | 50 | - | - | |
Lapu3g00580 | 708 | SUPERFAMILY | FYVE/PHD zinc finger | 221 | 287 | IPR011011 | - | |
Lapu3g00580 | 708 | CDD | PHD_PRHA_like | 229 | 281 | IPR045876 | - | |
Lapu3g00580 | 708 | Pfam | PHD-finger | 229 | 284 | IPR019787 | - | |
Lapu3g00580 | 708 | MobiDBLite | consensus disorder prediction | 352 | 373 | - | - | |
Lapu3g00580 | 708 | SMART | HOX_1 | 483 | 545 | IPR001356 | GO:0003677 | |
Lapu3g00580 | 708 | ProSitePatterns | Zinc finger PHD-type signature. | 230 | 281 | IPR019786 | - | |
Lapu3g00580 | 708 | ProSiteProfiles | 'Homeobox' domain profile. | 481 | 541 | IPR001356 | GO:0003677 | |
Lapu3g00580 | 708 | MobiDBLite | consensus disorder prediction | 1 | 139 | - | - | |
Lapu3g00580 | 708 | MobiDBLite | consensus disorder prediction | 541 | 624 | - | - | |
Lapu3g00580 | 708 | CDD | homeodomain | 484 | 545 | IPR001356 | GO:0003677 | |
Lapu3g00580 | 708 | MobiDBLite | consensus disorder prediction | 321 | 376 | - | - | |
Lapu3g00580 | 708 | MobiDBLite | consensus disorder prediction | 100 | 119 | - | - | |
Lapu3g00580 | 708 | MobiDBLite | consensus disorder prediction | 551 | 566 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu3g00580 | Lapu-Chr3 | 5936885 | 5941820 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu3g00580 | 132 | 546 | Homeobox Transcription Factor Family | AT4G29940 | 56.501 | 1.43e-147 | 447 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-PHD | Lapu3g00580 | Homeodomain | 1.1e-08 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu3g00580 | - | - | gmx:100817639 | 1094.34 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu3g00580 | 3 | 5936885 | 5941820 | Lapu3g00580 | 3 | 5936885 | 5941820 | ECH | |
Lapu3g00580 | 3 | 5936885 | 5941820 | Lapu9g00470 | 9 | 5172396 | 5179135 | PCT |