Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00578 ATGTCTTCGTGCTTGACCGGAGCTGGAGGAAGAACCTACGGATTCGATTTCGAATTTGTTAAATCTCCCTCTTCCTCCACCAGAACCTCACACACCTCTTCTTCACCTTCTTCAACAATCTCCGAATCCAGCAATTCGCCTCTCGCAATCTCCACCAAGAAACCCAGAACGCCGCGAAAGCGACCCAACCAAACCTACAATGAAGCCGCCGCCCTTCTCTCCACGGCCTACCCCTACCTCTTCTCAACGAAGAACCTCAAAACGCAGGGCAAGTTCGCAAAGCCCGCGTCGGAGAATTTCGATTATGACTCTTCGGAACTGTTGTTGCCCTTCAGGGTTTTCGATGGGTCGTCGTCGTGTTTCCTTCTAGACCAACTGGGCCCGAAGCCCATGGAGAGGCCCAAAGTGGTGAGCGTGCAGGAGAAGGCGTGTGGGAGCCCCGGGGAGATAAGCTCCGTAGTGAATTTCAATTCCCTCGAATTGAACGACGATTGCGAAGAGAGCCTCGACGCGGAATCGATTCTCGACGAGGAAATCGAAGAAGGGATCGATAGCATCATGGGGAGCAGGGTCCAAGAGGTCTCCAACGACGCCGTCAATAACTTCCCCTGGATAATGCCTTTTGGCGGGAAATCGGACTTCCCCAGACCCCGCGTCAGCGCTCTCCGCCACGTCGACGACGGGAACTGGTGGAATTTCCCGGCCGTCGATATTCTTCAAATATCGCCCAAAATTAATACCAAGCCTCCTCCGGTGACCGCCGAGAAGAAGATGAAGAAGAAGAAGGTGGCAGCAATTGCGGCGGCGGAGAAACCGGTCGCGGTGGAGTTGAAGAACGCGGAATTGCCCAAAGCGAAGCAAGGTTTGATGTTGAAATTGAATTACGACGACGTTCGGAGCACTTGGTCCGACCGTGGAACACCGTTCGCCGACGATAGCCCCCTCGCCGACCTGCCGGAAACTGACGCCAGTGCGCGGCTGTCGCAAATTGATTTGTGGTGGGACAATGGCGGAGTGAGAGAAGCTAGCGTGCAGCGCTACAAAGAGAAGCGGCGAACGCGGCTGTTCTCTAAGAAGATCAGGTATCAGGTGAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGTACGAGTGAGTTGA 1143 0.5451 MSSCLTGAGGRTYGFDFEFVKSPSSSTRTSHTSSSPSSTISESSNSPLAISTKKPRTPRKRPNQTYNEAAALLSTAYPYLFSTKNLKTQGKFAKPASENFDYDSSELLLPFRVFDGSSSCFLLDQLGPKPMERPKVVSVQEKACGSPGEISSVVNFNSLELNDDCEESLDAESILDEEIEEGIDSIMGSRVQEVSNDAVNNFPWIMPFGGKSDFPRPRVSALRHVDDGNWWNFPAVDILQISPKINTKPPPVTAEKKMKKKKVAAIAAAEKPVAVELKNAELPKAKQGLMLKLNYDDVRSTWSDRGTPFADDSPLADLPETDASARLSQIDLWWDNGGVREASVQRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKVRVS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00578 380 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 378 - -
Lapu3g00578 380 Pfam CCT motif 340 378 IPR010402 GO:0005515
Lapu3g00578 380 MobiDBLite consensus disorder prediction 22 52 - -
Lapu3g00578 380 MobiDBLite consensus disorder prediction 22 63 - -
Lapu3g00578 380 ProSiteProfiles CCT domain profile. 340 380 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00578 Lapu-Chr3 5919136 5923485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00578 284 378 C2C2-CO-like Transcription Factor Family AT1G68520 44.643 8.48e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu3g00578 CCT 7.1e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00578 - - gmx:100810303 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00578 3 5919136 5923485 Lapu3g00578 3 5919136 5923485 ECH