Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00574 ATGGAGAATATTGGTGAGCATTTCTGGGACACGTTCTTTCAAAACGAAGAGCTTGATAGCTGGGCAATGGATGAGGCGGCGTTGTCAGGGTACTATGATTCAAGCTCTCCTGATGGTGGTGCTTCATCGGTGGCGTCAAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTTAACGAAAGGCTTTTTGCGCTTAGAGCAGTGGTCCCCAACATCAGCAAGATGGATAAGGCTTCTATCATTAAGGACGCTATTGAATACATCCAGCACTTGCACGAGCAAGAGAAGAGAATCGAAGCAGAGATTTTGGATCTCGAATCTGGGAAGCTCAAAAACCCAACCTATGAATTTGAGCACGACCTGCCTGTTCTACTGAGGTCTAAGAAGAAGAGAACTGAACAGCTATTTGATTGTGCCTCTTCAAGAAATTCACCAATTGAGTTAATTGAGCTGAGGGTTGCATACATGGGAGAGAAGACGTTTGTGGTGAGCTTGACATGTAGTAAGAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTGAAGGTCATTACAGCCAATATCACTTCTTTTTCAGGAACACTTTTGAAGACAGTCTTCATTGAGGCAGATGAAGAAGAGAAAGATATTTTGCAGATAAAAATTAAGACAGCAATTTCAGCTCTGAATGGTCCTCATAGCCCGATGAGTATCTGA 714 0.43 MENIGEHFWDTFFQNEELDSWAMDEAALSGYYDSSSPDGGASSVASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKRIEAEILDLESGKLKNPTYEFEHDLPVLLRSKKKRTEQLFDCASSRNSPIELIELRVAYMGEKTFVVSLTCSKRTDTMVKLCEVFESLKLKVITANITSFSGTLLKTVFIEADEEEKDILQIKIKTAISALNGPHSPMSI* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00574 237 SMART finulus 49 98 IPR011598 GO:0046983
Lapu3g00574 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 106 IPR036638 GO:0046983
Lapu3g00574 237 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 39 223 - -
Lapu3g00574 237 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 40 110 - -
Lapu3g00574 237 Gene3D - 42 109 IPR036638 GO:0046983
Lapu3g00574 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Lapu3g00574 237 Pfam Helix-loop-helix DNA-binding domain 50 93 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00574 Lapu-Chr3 5882743 5888002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00574 7 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 62.019 1.93e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g00574 HLH 3.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00574 - - gmx:100803916 365.925