Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00566 ATGAGTTTCTCCAAGGGTTCTCCTGGCAGCCAGACGCCGGGTGATATAGAGGCCGGGTCTCCCACTGGCTGCACTGATGATTTTGATGACGGAGACTTTTCTGCTGATCCATTTGATGTTACCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGCTGGAGGCAAGCGGCACTTGTTCTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAACGAAGAAGAGAAGAAGCGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCTGCATATCGATTCAAGGAAGCTGGGCAAATGAATGGAACTATAAAACCTGATTCAAGCTCCACCGGAGAATTTTCAATTGGACAAGAACAACTTTCTTCAATTTCAAGGGACCGTGATACTACTGCTCTGCGGGAAAATGAAGGGGTTGTAGGGTTATCAAATTTATTGAAAACCAATTTAGAGAAGGGGATTCGAGGTGATGATGCCGATTTGGTAATACGGAGGAATTCATTTGGCTCCAACAACTACCCTCGAAAGAGCGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGATTTGACCTTGATTATTCTAATGGTGGCAGCAATGGCTTCATTAGCACTAGGGATAAAATCTGAGGGTATCCAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGATCTAAATGAGCACAAGCGAAACATACATTTGGAGGTCATTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAACCAGGTTCCCGCTGATGGAGTTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCAAGTATGACCGGGGAGAGCAAAATTGTCGAAAAAAATTCTAACGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAGTGGAACTATGCTGGTAACGGCTGTTGGTATTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACTCCTTTGCAGGTACGCTTAAATGGTGTCGCTACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTGTTGTTCTGATAGTGCTACTGGCCAGGTATTTTTCTGGGCATACTAGAAACTCTGATGGAAGTGTTCAGTTTATAGCGGGCAAAACCAAAGTTGGTGATGTTATTGATGGAGTAATCAAGATATTCACTGTTGCGGTTACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTGCCTTTAGCAGTTACCTTAACTCTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTCTCTGCCTGTGAGACAATGGGGTCAGCAACAACCATCTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGAAGATTACTCCTCCTTATGGTAAATCGCAGTTCTCTCCTATGCTATGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGTCCCTGAGGGTGGTAATGATGTTGAGATTTCTGGATCACCAACCGAGAAGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGCGTTTTGATGCTGTCAGATCAGAATCATCAATCATCCATGTCTTTCCCTTTAATTCAGACAAAAAGCGAGGAGGAGTTGCAATACAGATGCCTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCCGAGATAGTCCTTGCTTGCTGTACAGGGTATATTGATGCTAATGGTCAGTTGGTGGCGATGGATGAAGAGAAGATGTCATATTTTAAAAAAGCTATTGAAGATATGGCTGCTGATAGTCTACGCTGTGTCGCAATTGCATATAGATCATATAAAATGGAGAATGTCCCAACTAGTCAAGAACTTGCTCACTGGTCATTACCAGAGGAGGATCTTCTTTTATTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGGGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATTCTTGGTTCAATCTCTGAAGCTACCGAGCCAATCATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATGAAGGGAGAGCAGAAATTGTTGACAGCATATTGGTTATGGGACGGTCATCTCCAAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCAAGTTGTGGCTGTAACCGGAGATGGAACAAATGATGCTCCCGCACTGCATGAGGCCGATATTGGTCTTGCAATGGGTATCCAAGGAACAGAAGTTGCTAAAGAAAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCACTTGCTATAAACGTTGTTGCTGCATTTTCCACAGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTCATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCACCAACTGATTCCCTGATGGATCAGCTTCCAATGGGCCGAAGAGAACCTCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAGTGTATCAAGTTTCTGTGTTGCTTGTACTTAATTTCCAAGGTGTGAACTTACTGGGTTTGAGGAATGAACCCAACCGCCCTGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCATTTGTTTTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCAGATAAATTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGGAATAACTGTTGTGCTCCAGATTGTCATTATTGAATTTCTTGGAAAGTTCACTAAAACAGTCAAGCTTAATTGGAAGCTGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCTCTTGCTGTGCTTGGAAAACTGATACCAGTACCGAAGGCTCAAGTCAGTAACTTTTTCAGAAGATATTTTGGAAGAAGTTAA 3216 0.4226 MSFSKGSPGSQTPGDIEAGSPTGCTDDFDDGDFSADPFDVTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKNEEEKKRVLRIVIVHTRAIQAAYRFKEAGQMNGTIKPDSSSTGEFSIGQEQLSSISRDRDTTALRENEGVVGLSNLLKTNLEKGIRGDDADLVIRRNSFGSNNYPRKSGRSFLMFMWDACKDLTLIILMVAAMASLALGIKSEGIQEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGSGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLSVAVVVLIVLLARYFSGHTRNSDGSVQFIAGKTKVGDVIDGVIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKKITPPYGKSQFSPMLCSLLIEGVAQNTNGSVYVPEGGNDVEISGSPTEKAILEWGIKLGMRFDAVRSESSIIHVFPFNSDKKRGGVAIQMPDSEIHIHWKGAAEIVLACCTGYIDANGQLVAMDEEKMSYFKKAIEDMAADSLRCVAIAYRSYKMENVPTSQELAHWSLPEEDLLLLAIIGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSISEATEPIIIEGKRFRALTDEGRAEIVDSILVMGRSSPNDKLLLVQALRRKGQVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQLPMGRREPLVSNIMWRNLLIQAVYQVSVLLVLNFQGVNLLGLRNEPNRPAIKVKNSLIFNAFVFCQVFNEFNARKPDKFNIFKGVTRNYLFMGIVGITVVLQIVIIEFLGKFTKTVKLNWKLWLISVIIAFISWPLAVLGKLIPVPKAQVSNFFRRYFGRS* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00566 1071 Pfam Cation transporter/ATPase, N-terminus 143 208 IPR004014 -
Lapu3g00566 1071 FunFam Calcium-transporting ATPase 46 102 - -
Lapu3g00566 1071 SUPERFAMILY HAD-like 482 896 IPR036412 -
Lapu3g00566 1071 FunFam Calcium-transporting ATPase 808 1057 - -
Lapu3g00566 1071 Pfam haloacid dehalogenase-like hydrolase 481 805 - -
Lapu3g00566 1071 SUPERFAMILY Calcium ATPase, transduction domain A 262 357 IPR008250 -
Lapu3g00566 1071 Gene3D - 481 836 IPR023214 -
Lapu3g00566 1071 SFLD p-type atpase 466 843 IPR044492 -
Lapu3g00566 1071 PRINTS H+-transporting ATPase (proton pump) signature 637 655 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00566 1071 PRINTS H+-transporting ATPase (proton pump) signature 823 848 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00566 1071 PRINTS H+-transporting ATPase (proton pump) signature 791 807 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00566 1071 MobiDBLite consensus disorder prediction 1 18 - -
Lapu3g00566 1071 Gene3D - 47 102 - -
Lapu3g00566 1071 PANTHER CATION TRANSPORTING ATPASE 110 1055 - -
Lapu3g00566 1071 Gene3D - 494 691 IPR023299 GO:0000166
Lapu3g00566 1071 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 78 IPR024750 GO:0005516
Lapu3g00566 1071 FunFam Calcium-transporting ATPase 192 249 - -
Lapu3g00566 1071 FunFam Calcium-transporting ATPase 494 691 - -
Lapu3g00566 1071 NCBIfam calcium-translocating P-type ATPase, PMCA-type 132 1055 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lapu3g00566 1071 FunFam Calcium-transporting ATPase 239 360 - -
Lapu3g00566 1071 FunFam Calcium-transporting ATPase 9 plasma membrane-type 338 508 - -
Lapu3g00566 1071 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Lapu3g00566 1071 PRINTS P-type cation-transporting ATPase superfamily signature 706 716 - -
Lapu3g00566 1071 PRINTS P-type cation-transporting ATPase superfamily signature 684 695 - -
Lapu3g00566 1071 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Lapu3g00566 1071 PRINTS P-type cation-transporting ATPase superfamily signature 815 827 - -
Lapu3g00566 1071 PRINTS P-type cation-transporting ATPase superfamily signature 791 810 - -
Lapu3g00566 1071 MobiDBLite consensus disorder prediction 1 41 - -
Lapu3g00566 1071 ProSitePatterns E1-E2 ATPases phosphorylation site. 486 492 IPR018303 -
Lapu3g00566 1071 Pfam Cation transporting ATPase, C-terminus 876 1053 IPR006068 -
Lapu3g00566 1071 NCBIfam HAD-IC family P-type ATPase 229 399 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00566 1071 NCBIfam HAD-IC family P-type ATPase 426 507 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00566 1071 NCBIfam HAD-IC family P-type ATPase 758 871 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g00566 1071 Pfam E1-E2 ATPase 262 462 - -
Lapu3g00566 1071 SUPERFAMILY Calcium ATPase, transmembrane domain M 145 1055 IPR023298 -
Lapu3g00566 1071 Gene3D - 192 1044 - -
Lapu3g00566 1071 Gene3D - 168 360 - -
Lapu3g00566 1071 SFLD Haloacid Dehalogenase 466 843 - -
Lapu3g00566 1071 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 491 688 IPR023299 GO:0000166
Lapu3g00566 1071 SMART Cation_ATPase_N_a_2 143 214 IPR004014 -
Lapu3g00566 1071 FunFam Calcium-transporting ATPase 685 836 - -
Lapu3g00566 1071 CDD P-type_ATPase_Ca_PMCA-like 169 924 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00566 Lapu-Chr3 5736286 5765954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00566 2 1070 Primary Pumps ATPases AT5G57110 69.553 0.0 1523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00566 K01537 - gmx:100790157 1864.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00566 3 5736286 5765954 Lapu3g00566 3 5736286 5765954 ECH
Lapu3g00566 3 5736286 5765954 Lapu9g00458 9 4936698 4957936 PCT