Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00563 ATGGATGGGTTAAAGCAGGCGGAGAAGAAGAAAAACACAGGGCGGAAGAAGATCGAGATAAAGAAGATTGAGAAACCTTGCAACAAGCAAGTGACATTCTCAAAAAGAAGAGTGGGGCTGTTCAGAAAAGCGAGTGAACTGTGCATTTTGTGCAATGTTAATATAGCCATGATTGTGTTTTCTCCTGCTGACAAGTTGTTCTGCTTTGCCCATCCTGACCTGGAAGCCATTGTTGGTAGCTACTTAAAGGGAGACAAAGCGTTTGCAGCATCAGGGAGAAGAGGGTCATATCAAGAAAGCAACATGCAATACGAGGAGGCAATGAAGAATTTGGCGTTGGAAAAGAAGAATCTGAAAGAAACTGAAACAATGGCTAAGGGTTTGACCAGAAGGTGGTGGGAGGACCCTATTGATCAGATGAGTGAACGTGAGTTGGAACAGTTTATGGTGTCCCTTTATGAGTTGAGGAAGAAACTAACTGAAAGGGCTGGTCAGTTGTTCATGCTTTCAATTCAATGA 519 0.4316 MDGLKQAEKKKNTGRKKIEIKKIEKPCNKQVTFSKRRVGLFRKASELCILCNVNIAMIVFSPADKLFCFAHPDLEAIVGSYLKGDKAFAASGRRGSYQESNMQYEEAMKNLALEKKNLKETETMAKGLTRRWWEDPIDQMSERELEQFMVSLYELRKKLTERAGQLFMLSIQ* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00563 172 FunFam Agamous-like MADS-box protein AGL62 25 90 - -
Lapu3g00563 172 SUPERFAMILY SRF-like 14 83 IPR036879 GO:0003677|GO:0046983
Lapu3g00563 172 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Lapu3g00563 172 Gene3D - 27 126 IPR036879 GO:0003677|GO:0046983
Lapu3g00563 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
Lapu3g00563 172 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Lapu3g00563 172 Coils Coil 97 131 - -
Lapu3g00563 172 PANTHER MADS BOX PROTEIN 15 161 - -
Lapu3g00563 172 Coils Coil 4 24 - -
Lapu3g00563 172 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Lapu3g00563 172 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Lapu3g00563 172 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00563 Lapu-Chr3 5720791 5721309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00563 14 160 Type I MADS-box Gene Family AT2G24840 42.308 2.35e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu3g00563 SRF-TF 8.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00563 - - gmx:100814979 235.343