Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu3g00559 | ATGGCTGTAGATCTGGCAGGTGTTGCCAAGATTAGGATGGAAGAACAGATGGCCATAGAAGAAGCTGCTTCCGCTGGATTGAAGAGTATGGAGCATCTCATTCGTGTCCTTTCTTCTCAAATCCCCTCTGCTGCTTCCTCCTCTTCTTCCACACACCACCACCGTCTTAATCTCAACCACCTTGACTGCACGGAAATCACCGACTTCACTGTCTCCAAGTTTAAACAAGTCATCAACTTGTTGAATCGCACTGGTCACGCTCGCTTTCGCCGCGCCCCTTCTCGTCCTTCTACCTCCCCCTCCCCCTCCCTTCCCTCTCCACCACAACCTAACACTCAAAAACTCACTCTTGATTTTGCAAACCCTAAGCTCATCTCAAATCCTGATCATCCTAACCCTTCTTCCACCGATTTGTCGGTTTCTCAATATTCTAAGGCCAAAGACACCAACTTTAGCATATCCCCTCCCATCTCCACCACCACCTCCTCCTTCATGTCCTCCATCACCGGCGACGGCAGCGTCTCCGACGGCAAGATCGGCCCCGCCATCCTCGCCTCCGGGAAGCCCCCTCTCTCCTCATCCCACCGGAAAAGGTGCCACGACGCTACCCTCTCCGCAGGGAAAGCCTCATCTTCCGCCCACTGTCATTGCTCCAAGAGAAGGAAATCTCGGGTGAAACGAATGATTCGAGTGCCGGCGATAAGTTCGAAGATCGCCGATATCCCTGCGGACGAGTACTCGTGGAGAAAGTATGGTCAAAAACCCATCAAGGGATCACCCTACCCACGAGGGTACTACAAGTGCAGTAGCGTGCGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGAGCCCAGGATGACCCCAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAGCCGCGTATGCCGGAAACCGCCGTCGGAGCCGCGGTGGTTTTCGCTGCTCAGCCTGTGTAG | 966 | 0.5476 | MAVDLAGVAKIRMEEQMAIEEAASAGLKSMEHLIRVLSSQIPSAASSSSSTHHHRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSRPSTSPSPSLPSPPQPNTQKLTLDFANPKLISNPDHPNPSSTDLSVSQYSKAKDTNFSISPPISTTTSSFMSSITGDGSVSDGKIGPAILASGKPPLSSSHRKRCHDATLSAGKASSSAHCHCSKRRKSRVKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRMPETAVGAAVVFAAQPV* | 322 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu3g00559 | 321 | Pfam | WRKY DNA -binding domain | 244 | 301 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lapu3g00559 | 321 | SUPERFAMILY | WRKY DNA-binding domain | 240 | 303 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lapu3g00559 | 321 | ProSiteProfiles | WRKY domain profile. | 237 | 303 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lapu3g00559 | 321 | SMART | WRKY_cls | 242 | 302 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lapu3g00559 | 321 | MobiDBLite | consensus disorder prediction | 85 | 142 | - | - | |
Lapu3g00559 | 321 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 16 | 305 | IPR044810 | GO:0003700 | |
Lapu3g00559 | 321 | Gene3D | WRKY domain | 228 | 304 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lapu3g00559 | 321 | Pfam | Plant zinc cluster domain | 196 | 240 | IPR018872 | - | |
Lapu3g00559 | 321 | FunFam | WRKY transcription factor 65 | 226 | 303 | - | - | |
Lapu3g00559 | 321 | MobiDBLite | consensus disorder prediction | 127 | 142 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu3g00559 | Lapu-Chr3 | 5677243 | 5678956 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu3g00559 | 1 | 307 | WRKY Transcription Factor Family | AT2G24570 | 50.742 | 1.76e-96 | 286 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Lapu3g00559 | WRKY | 1.7e-26 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu3g00559 | - | - | var:108322692 | 510.76 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu3g00559 | 3 | 5677243 | 5678956 | Lapu3g00559 | 3 | 5677243 | 5678956 | ECH | |
Lapu3g00559 | 3 | 5677243 | 5678956 | Lapu9g00452 | 9 | 4860171 | 4862257 | PCT |