Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00559 ATGGCTGTAGATCTGGCAGGTGTTGCCAAGATTAGGATGGAAGAACAGATGGCCATAGAAGAAGCTGCTTCCGCTGGATTGAAGAGTATGGAGCATCTCATTCGTGTCCTTTCTTCTCAAATCCCCTCTGCTGCTTCCTCCTCTTCTTCCACACACCACCACCGTCTTAATCTCAACCACCTTGACTGCACGGAAATCACCGACTTCACTGTCTCCAAGTTTAAACAAGTCATCAACTTGTTGAATCGCACTGGTCACGCTCGCTTTCGCCGCGCCCCTTCTCGTCCTTCTACCTCCCCCTCCCCCTCCCTTCCCTCTCCACCACAACCTAACACTCAAAAACTCACTCTTGATTTTGCAAACCCTAAGCTCATCTCAAATCCTGATCATCCTAACCCTTCTTCCACCGATTTGTCGGTTTCTCAATATTCTAAGGCCAAAGACACCAACTTTAGCATATCCCCTCCCATCTCCACCACCACCTCCTCCTTCATGTCCTCCATCACCGGCGACGGCAGCGTCTCCGACGGCAAGATCGGCCCCGCCATCCTCGCCTCCGGGAAGCCCCCTCTCTCCTCATCCCACCGGAAAAGGTGCCACGACGCTACCCTCTCCGCAGGGAAAGCCTCATCTTCCGCCCACTGTCATTGCTCCAAGAGAAGGAAATCTCGGGTGAAACGAATGATTCGAGTGCCGGCGATAAGTTCGAAGATCGCCGATATCCCTGCGGACGAGTACTCGTGGAGAAAGTATGGTCAAAAACCCATCAAGGGATCACCCTACCCACGAGGGTACTACAAGTGCAGTAGCGTGCGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGAGCCCAGGATGACCCCAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCGCAGCCGCGTATGCCGGAAACCGCCGTCGGAGCCGCGGTGGTTTTCGCTGCTCAGCCTGTGTAG 966 0.5476 MAVDLAGVAKIRMEEQMAIEEAASAGLKSMEHLIRVLSSQIPSAASSSSSTHHHRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSRPSTSPSPSLPSPPQPNTQKLTLDFANPKLISNPDHPNPSSTDLSVSQYSKAKDTNFSISPPISTTTSSFMSSITGDGSVSDGKIGPAILASGKPPLSSSHRKRCHDATLSAGKASSSAHCHCSKRRKSRVKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERAQDDPNMLIVTYEGEHRHPQPRMPETAVGAAVVFAAQPV* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00559 321 Pfam WRKY DNA -binding domain 244 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g00559 321 SUPERFAMILY WRKY DNA-binding domain 240 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g00559 321 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g00559 321 SMART WRKY_cls 242 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g00559 321 MobiDBLite consensus disorder prediction 85 142 - -
Lapu3g00559 321 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 305 IPR044810 GO:0003700
Lapu3g00559 321 Gene3D WRKY domain 228 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g00559 321 Pfam Plant zinc cluster domain 196 240 IPR018872 -
Lapu3g00559 321 FunFam WRKY transcription factor 65 226 303 - -
Lapu3g00559 321 MobiDBLite consensus disorder prediction 127 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00559 Lapu-Chr3 5677243 5678956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00559 1 307 WRKY Transcription Factor Family AT2G24570 50.742 1.76e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu3g00559 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00559 - - var:108322692 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00559 3 5677243 5678956 Lapu3g00559 3 5677243 5678956 ECH
Lapu3g00559 3 5677243 5678956 Lapu9g00452 9 4860171 4862257 PCT