Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00558 TGTTTGATTATCTTATTTGTGCAGTCAGAGGTGAATTTCTTAGGGAGCCTTTCTCATCCCAACCTTGTGAAGTTGTTGGGATTTCGACGAGAGGAAAAAGAGCTGTTCCTGGTTTTCAAATTCATGCGTCGTGGTTCCTTGGATAACCACCTATTTGGAAGAGGTGCAAATGTTCGACCCCTTTCTTGGGATACAAGGCTAAAGGTTATGATTGGAGTAGCTAAGGGACTGAATTTCCTTCATTCCATGGAAATGAAAATTGTACATAGAGATATTAAACCCTCAAATATACTCCTTGACGAGACATATACGGCAAAGTTATCAGACTTTGGCTTAGCCAAGACTTTTACTTCGCTTGAT 360 0.4028 CLIILFVQSEVNFLGSLSHPNLVKLLGFRREEKELFLVFKFMRRGSLDNHLFGRGANVRPLSWDTRLKVMIGVAKGLNFLHSMEMKIVHRDIKPSNILLDETYTAKLSDFGLAKTFTSLD 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00558 120 ProSitePatterns Serine/Threonine protein kinases active-site signature. 87 99 IPR008271 GO:0004672|GO:0006468
Lapu3g00558 120 FunFam Os07g0541700 protein 42 120 - -
Lapu3g00558 120 SMART serkin_6 2 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00558 120 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 117 - -
Lapu3g00558 120 Pfam Protein kinase domain 7 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00558 120 Gene3D Transferase(Phosphotransferase) domain 1 5 120 - -
Lapu3g00558 120 SUPERFAMILY Protein kinase-like (PK-like) 6 118 IPR011009 -
Lapu3g00558 120 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00558 Lapu-Chr3 5661577 5662162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00558 8 120 Receptor kinase-like Gene Family AT1G30570 49.123 4.01e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu3g00558 Pkinase 6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00558 - - gmx:100813304 191.045