Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00557 ATGGGGAACTGTTGGAGTTTTCAATCAGGGTCTCCAGTTGATCACCGCAACCCCAACAATCAATCAGGCAATTCATCAATTCAAAAGACAGTCCTTGGGATTATTCAGTTATCTGCTGGTCTCAGCAACAAAAGATTAATACAGAACAGTAATTCTACTTCTCTGGGGCGTAGCAGCCACTCTGGAGGAATCAGCAGGTTCTTTGGACCAAGCAGTAGCAATAATCACTCAGCAGGCAATAACACTAGCACATCCTTTTGGGGCTCTGAGAATAGCCAAGCCTCTCGAGCAAGGGATGAAGAGGAGAGGGGGAAAATCTTGGATGTTGCAGACTTGAGAGCATTTACTTTGGCAGAATTGAAGGCAGCCACCAAAAATTTCAAAGCTGACTCTCTGTTAGGAGAGGGGGGATTTGGTAAAGTATACAAGGGTTTGATTGGAGATGAGGGGTTGCCTATTGCCATCAAGAAGTTGAATTCTGGAAGCAGGCAAGGACTTGTGGAATGGCAGTCAGAGGTTAATTTCTTAGGGAGGCTTTCTCATCCCAACCTTGTTAAGTTGTTGGGATTTGGGCGGCAGGAGGATAGTAACCTGTTTCTGGTGTATGAATTTATGCCTCGTGGCAGCTTGGATAATCACCTGTTTGGAAGAGGAGCAAATGTTCGGCCACTTTCTTGGGACACAAGGCTAAAAATTATGATTGGAGCAGCTAGGGGGCTGCATTTTCTTCACAGCTTGGAGAATGCAATTATATATAGAGATTTCAAACCCTCAAATATACTACTCGACTCAACATACGAGGCTAGGTTATCCGATTTTGGCTTAGCCAAATCTATTACTTCGCCTGATCAGAGTCACGTATCAACCCAGGTTGTGGGAACACACGGCTATGCTGCTCCTGAGTACGTTGCAACAGGTCATTTGTACGTGAAAAGTGATGTGTATGGATTTGGAATTTTTTTGGTGGAGTTGCTGACTGGCAAGAGGATTAGTGGTATAATGCGACTATGTGAGGGAACGTCCTTGAGGGATTGGGTCAAAAGAAATCTTCTAAATAGAGGGTTGATAATAAGCACTATGGATGCAAAGTTGGAAGGAAAGTATCCATTCAACTTAGCTTTACAAATGGCTCAACTAGCTCTCAAATGCATCCAAACAGAACCCAAAGTGAGGCCATCAATGAAAGAAGTTGTTGAAAGATTGGAACAGATTGAAGCAGCCAATGAGAAACCAGCTGATAACAGAAGACGGGTTAATCTTTCTCGGGTTGTTCAACAACATGGCCGTCCAGATGGTGGCTAA 1302 0.4393 MGNCWSFQSGSPVDHRNPNNQSGNSSIQKTVLGIIQLSAGLSNKRLIQNSNSTSLGRSSHSGGISRFFGPSSSNNHSAGNNTSTSFWGSENSQASRARDEEERGKILDVADLRAFTLAELKAATKNFKADSLLGEGGFGKVYKGLIGDEGLPIAIKKLNSGSRQGLVEWQSEVNFLGRLSHPNLVKLLGFGRQEDSNLFLVYEFMPRGSLDNHLFGRGANVRPLSWDTRLKIMIGAARGLHFLHSLENAIIYRDFKPSNILLDSTYEARLSDFGLAKSITSPDQSHVSTQVVGTHGYAAPEYVATGHLYVKSDVYGFGIFLVELLTGKRISGIMRLCEGTSLRDWVKRNLLNRGLIISTMDAKLEGKYPFNLALQMAQLALKCIQTEPKVRPSMKEVVERLEQIEAANEKPADNRRRVNLSRVVQQHGRPDGG* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00557 433 CDD STKc_IRAK 133 404 - -
Lapu3g00557 433 Gene3D Phosphorylase Kinase; domain 1 111 204 - -
Lapu3g00557 433 PANTHER OS01G0588500 PROTEIN-RELATED 85 405 - -
Lapu3g00557 433 MobiDBLite consensus disorder prediction 51 102 - -
Lapu3g00557 433 Pfam Protein kinase domain 128 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00557 433 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 205 415 - -
Lapu3g00557 433 SUPERFAMILY Protein kinase-like (PK-like) 108 406 IPR011009 -
Lapu3g00557 433 ProSiteProfiles Protein kinase domain profile. 127 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00557 433 MobiDBLite consensus disorder prediction 51 93 - -
Lapu3g00557 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Lapu3g00557 433 FunFam receptor-like protein kinase FERONIA 89 204 - -
Lapu3g00557 433 Gene3D Transferase(Phosphotransferase) domain 1 205 427 - -
Lapu3g00557 433 ProSitePatterns Protein kinases ATP-binding region signature. 133 157 IPR017441 GO:0005524
Lapu3g00557 433 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00557 Lapu-Chr3 5653196 5655431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00557 104 409 Receptor kinase-like Gene Family AT4G02010 45.130 2.51e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu3g00557 Pkinase 8.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00557 - - pvu:PHAVU_003G139200g 725.702