Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00553 ATGGAAGACAATGAAGAATGCATCACTGGGCTGTGTTTGGGACTAGGAATGGGAGGGCATGTCACCAAAACGGGTAAGCAGAAAGAGAACAGGCCTGTGGCGTGCCTGGACTTGTCGTTTGAGCTTTGTCCAAAAGGGGAAGCCATTAACTTGAATCATGATAAGGTAGAGAGCACTGATTCTGATAACAGCAACAACAACAACAACGGATGCAGAAAGAAGCTGAGGCTTTCCAAGGACCAATCATCCATGCTTGAGAACAGCTTCAAACTGCATAGCACTCTTAATCCGGTCCAGAAACAAGCACTAGCTGATCAATTGAATTTAAAGACCAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGGATCGTGAGTTGTTGAAAAAACACTGTCAAAATCTAAGTGATGAGAACAAGAGATTGAAGAAGGAATTGCAGGAGCTACGTGCACTTAAGGTTGGACCATCGCCTCAATTCACTCAACTATCCAAAACGGCGACTCTGACTATGTGTTCTTCGTGCGAGAAACTAGTAAAACTGAATGAAGGAAAGAACAACATAGGGTTAGAGGGTAGAAATTGA 612 0.4346 MEDNEECITGLCLGLGMGGHVTKTGKQKENRPVACLDLSFELCPKGEAINLNHDKVESTDSDNSNNNNNGCRKKLRLSKDQSSMLENSFKLHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVDRELLKKHCQNLSDENKRLKKELQELRALKVGPSPQFTQLSKTATLTMCSSCEKLVKLNEGKNNIGLEGRN* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00553 203 CDD homeodomain 72 129 IPR001356 GO:0003677
Lapu3g00553 203 Pfam Homeodomain 72 126 IPR001356 GO:0003677
Lapu3g00553 203 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Lapu3g00553 203 SMART halz 128 171 IPR003106 GO:0006355|GO:0043565
Lapu3g00553 203 Gene3D - 78 124 - -
Lapu3g00553 203 SUPERFAMILY Homeodomain-like 59 129 IPR009057 -
Lapu3g00553 203 Coils Coil 127 161 - -
Lapu3g00553 203 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Lapu3g00553 203 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 54 189 - -
Lapu3g00553 203 SMART HOX_1 70 132 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00553 Lapu-Chr3 5617394 5618566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00553 58 186 Homeobox Transcription Factor Family AT3G60390 65.116 5.24e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lapu3g00553 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00553 K09338 - gmx:100812222 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00553 3 5617394 5618566 Lapu9g00448 9 4819455 4820611 PCT