Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00550 ATGACATTATTGACCAACACTGTTGAATCAGAATGCTTGCTTCTGTCCCCAAGAATGTCTCGGAGAATACTTCAAGTGTCTGCAGAGGAACCTCCTTCATCCTCTGAGTCTCTAGAAACCTCTGCGTCACACCACGACCCTGGAGTGTTCTTCTTCCTTGGGGGGACTGTATCGCTCATCATATTGCTCATTCTTCTGTTTATATTTTGGAGGCGTATTAAAGGGCCAACACAGGTGATGGAGAATACAATTCTAACATGGAAATATATTGAACCGTCTGAGGTGATGAAGATGATAGTCCCAAATATACAACAAGGACCGATGGAGTTCATTAGTGGGAACCTTCGGACAATTAGCTACTTTGACTTCCGGACATTGAGGAGAGCCACTAAGAATTTCCATCCTCGAAATCTTCTTGGAAGTGGTGGATTTGGGCCTGTCTATCAGGGCAAGTTGGCAGATGGAAGGCTTGTTGCAGTAAAGACATTGTCTCTTGACAATTCTCAACAAGGAGAAAAAGAATTTCTGGCAGAAGTGAGAATGATCACAAGCATCCAACACAAAAATCTGGTTCGCCTTCTCGGATGCTGCACAGATGGGCCTCAAAAGATACTCGTGTACGAATATATGAAGAACAGAAGTTTGGACCTCATAATTTATGGAAAGAGTGATCAATTTCTGAATTGGAACACTAGATTCCAGATTATTCTTGGTGTAGCAAGGGGATTGCAATATCTCCACGAGGATTCACATTTAAGAATTGTTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGAGAAGTTCCAGCCTAGGATTGGAGACTTTGGGCTAGCTAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACTCAGTTCGCAGGAACATTAGGTTATACAGCTCCTGAGTATGCCATTAGAGGAGAACTGTCCGAAAAGGCAGACATCTATAGTTTCGGAGTTCTTGCGCTTGAAATCATCAGTTGCAGGAAAAACACAGACCTTACTTTACCATCTGAAATGCAGTACCTCCCTGAATATGCATGGAAACTTTATGAGAAGTCAATGCTGATGGAAATAGTGGATCCAAAGCTGCGAGAAGATGGCATGGAAGAAAAGGATGTTATGCAAGCATTTCACGTGGCCTTATCGTGCCTTCAGCCACACGCGGATTTGAGACCTGCGATGTCAGAAATCGTAGCATTGCTGACATTCAAAGTTGAAATGGTTACCACGCCGATGAGGCCAACCTTCATTCATAGAAGGCGCATAATGGATGATGAGAACCACTCTTGGGGAGCCATGTCCTCCGAGACTTCCACAACTGCAGTGGCATCCCCGTAA 1347 0.4395 MTLLTNTVESECLLLSPRMSRRILQVSAEEPPSSSESLETSASHHDPGVFFFLGGTVSLIILLILLFIFWRRIKGPTQVMENTILTWKYIEPSEVMKMIVPNIQQGPMEFISGNLRTISYFDFRTLRRATKNFHPRNLLGSGGFGPVYQGKLADGRLVAVKTLSLDNSQQGEKEFLAEVRMITSIQHKNLVRLLGCCTDGPQKILVYEYMKNRSLDLIIYGKSDQFLNWNTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLALEIISCRKNTDLTLPSEMQYLPEYAWKLYEKSMLMEIVDPKLREDGMEEKDVMQAFHVALSCLQPHADLRPAMSEIVALLTFKVEMVTTPMRPTFIHRRRIMDDENHSWGAMSSETSTTAVASP* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00550 448 FunFam Cysteine-rich receptor-like protein kinase 10 98 209 - -
Lapu3g00550 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Lapu3g00550 448 SUPERFAMILY Protein kinase-like (PK-like) 113 407 IPR011009 -
Lapu3g00550 448 ProSiteProfiles Protein kinase domain profile. 133 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00550 448 Gene3D Phosphorylase Kinase; domain 1 107 209 - -
Lapu3g00550 448 CDD STKc_IRAK 139 405 - -
Lapu3g00550 448 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 37 440 - -
Lapu3g00550 448 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 210 414 - -
Lapu3g00550 448 Pfam Protein tyrosine and serine/threonine kinase 137 403 IPR001245 GO:0004672|GO:0006468
Lapu3g00550 448 Gene3D Transferase(Phosphotransferase) domain 1 210 413 - -
Lapu3g00550 448 SMART serkin_6 133 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00550 Lapu-Chr3 5595458 5598344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00550 121 420 Receptor kinase-like Gene Family AT1G56120 49.333 3.54e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu3g00550 PK_Tyr_Ser-Thr 6.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00550 - - gmx:100812302 724.931