Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00544 ATGATTCCAGCCTATCGCCGCTCAGTATCTTCTGTGATTCCTCTGGATCTTAATGAAGATCAAAACCATGAGCTCTTCACTCCAACGCATCATGCTTACCCTTCTTTTTCTTCTCTATCTTCATCGTATCCTGTTCTCTTCAACCCCCAAAATCAAGAAGCTGGATCGCACTACTGGGAACCAACAAAGCACTTGCCAAGTCGTGAAGAGGCTGAGAAGATTAACCCTACCATGGGATCATGGGATCACTCGGTGGCAGAAAGTGAGCTCAAGGTGACAGTTTGGAAGAAAAAAGAGAGGATGGAAGATCATGAAACAGCTGCTGAGGATGATTCGGTGAAGTGGATGTCTTCAAAGATGAGAATGATGAGGAAGATGATGGTGCCGGATCAAACTGGTGCATATATAGAAGACAACACTACGAACAAGTTTGAAGATCAGAAGCAACCATTGTCACCGCCTGGAACTGATAACAGCAGCAGCAACAACTATTCAAACCACAGTAATAACACTATTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTCTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCCTGTGGAATTCGACAAAGGAAGGCGAGACGAGCCATGGCAGCTGCAGCATCGGGAAATGGAACAGTGATTGTGGAAACTGAGAAATCTGTGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGACAAGAACTCAGGGTGCACCACAGATGAAAAAGAAGCGCAAACATGGAGTTGGAGCAAAGCCATCTCAAAGCAGAAACAAATTTGGTTTTGAGGATTTGACATTACGCCTAAGAAAGAGCTTGGCTATGCATCAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTATCTTATGGCCTTGTTCATGGATGA 927 0.4552 MIPAYRRSVSSVIPLDLNEDQNHELFTPTHHAYPSFSSLSSSYPVLFNPQNQEAGSHYWEPTKHLPSREEAEKINPTMGSWDHSVAESELKVTVWKKKERMEDHETAAEDDSVKWMSSKMRMMRKMMVPDQTGAYIEDNTTNKFEDQKQPLSPPGTDNSSSNNYSNHSNNTIRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAASGNGTVIVETEKSVKGNKLQKKEKKTRTQGAPQMKKKRKHGVGAKPSQSRNKFGFEDLTLRLRKSLAMHQVFPQDEKEAAILLMALSYGLVHG* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00544 308 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Lapu3g00544 308 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 308 - -
Lapu3g00544 308 MobiDBLite consensus disorder prediction 228 265 - -
Lapu3g00544 308 Gene3D - 170 267 IPR013088 GO:0006355|GO:0008270
Lapu3g00544 308 MobiDBLite consensus disorder prediction 246 260 - -
Lapu3g00544 308 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355|GO:0043565
Lapu3g00544 308 MobiDBLite consensus disorder prediction 229 245 - -
Lapu3g00544 308 CDD ZnF_GATA 174 202 IPR000679 GO:0006355|GO:0043565
Lapu3g00544 308 MobiDBLite consensus disorder prediction 141 165 - -
Lapu3g00544 308 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Lapu3g00544 308 SMART GATA_3 169 220 IPR000679 GO:0006355|GO:0043565
Lapu3g00544 308 FunFam GATA transcription factor 21 169 254 - -
Lapu3g00544 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00544 Lapu-Chr3 5547394 5549228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00544 15 308 C2C2-Gata Transcription Factor Family AT4G26150 34.060 4.36e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu3g00544 GATA 3.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00544 - - gmx:100810698 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00544 3 5547394 5549228 Lapu3g00544 3 5547394 5549228 ECH
Lapu3g00544 3 5547394 5549228 Lapu9g00444 9 4783822 4785974 PCT