Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00539 ATGCCTTTCGTGCCTCCAGTTCAAGCACTGCCACCACCACCTCCTAATGAAGATTGTTTATCAACTGTCTGCACAGAACCTAGTACAAATTCTCCACCTGGAGAACCTTGCAGATGCGTCTGGCCCATGCGAGTTGGCCTTCGCCTTAGTGTTTCTCTTTATACCTTCTTCCCTTTGGTTTCAGAACTAGCTTCTGAAATTGCCACTGGGGTTTTCATGAAACAAAGTCAAGTTCGCATTATGGGAGCAAATGCAGCAAACCAACAACCTGAGAAAACCGTTGTCCTTATTGATTTGGTGCCACTTGGTGAAGAGTTCGATCATACTACAGCCTTTTTGACTTCTGACAGATTTTGGCATAAAAAGGTCCTTATCAACGCATTTTATTTTGGAGACTATGACGTGTTATATGTGAGTTATCCAGGTTTACCTCCCTCTCCTCCTTTACCTCCTTCAAGCCTTAACATGTTCAATGGTGGTCCGTATTCCGCTGATGGCAATGATGGAAGGACAATAAAGCCCTTTGGGGTTGACATACCGAAGAGGCAGCATAAAGGTGGAGTTAACAGAAGCATAATTGCCATCATTGCTGTTTCAGTATCTTTAGCAGCTGTTTTATGTGCTGCTGCTGCTTGGGTCATGTTCAAGTACAGAGATCATGTTAGTCAGCCAGCAGCATCCCTACGACAGCTTTTGCCCCCTTCACTCAACAAAGAACCAGGTGAACCAGCCGGATCACTTAGAGGTGGGGGAGTTGGTTCCATTTCCACATCATTTCGATCTAGCATTGCTGCTTACACAGGATCTGCTACGATTTACAGTATGAATGAGATTGAGAAAGCCACTAATGATTTCCATGCTTCAAGAATACTTGGAGAGGGTGGTTTTGGCCGTGTTTACAGTGGTATCCTGGAAGATGAGACGAAAGTGGCGGTGAAGGTTTTAAAGAGGGAGGACCGTCATGGTGATCGTGAATTCTTAGCTGAAGTTGAGATGCTTAGCCGTCTTCACCATAGAAATTTGGTGAAGTTAATTGGTATATGTATTGAAGAGAGCTTGCGGTGCTTGGTTTATGAACTTGTTCCAAATGGAAGCGTGGAATCCCATTTACACGGGGTTGACAGGGAAAAGAGCCCCCTCGAGTGGAGTGTGCGGATGAAGATAGCTCTTGGTGCAGCTCGTGGTCTTGCTTATTTGCATGAAGATTCAAGTCCCCGAGTAATACACAGGGACTTCAAATCTAGCAACATATTGTTGGAAGATGATTTTACACCCAAAGTATCTGATTTCGGATTAGCTCGAACAGCAACTGATGAGGATAACAAACACGTATCAACACGTGTCATGGGAACTTTCGGTTATGTGGCGCCGGAGTATGCAATGACTGGGCATTTCCTCGTTAAGAGTGATGTTTACAGCTATGGTGTTGTTCTTCTTGAACTTTTGACTGGAAGAAAACCAGTAGACATGTCACAAGCTCCCGGTCAAGAGAATCTTGTTGCATGGGCTCGTCCACTTCTCACAACTAAAGAAGGATGTCAAACGATGGTAGACCCGTCTCTTGGAGCTGATGTGCCTTTCGATAGTGTGGCTAAAGTTGCAGCAATTGCCTCAATGTGTGTGCAACCAGAGGTATCAAACCGTCCCTTCATGGGTGAGGTTGTGCAGGCTTTAAAACTTTTATGTGATGAAGCAAAAGAAGAAGCAGGTTCAAGAAGTTGTAGCCTGGAGGATTTATCTGTTGATTTAGATCTCGAAATAAACACTGATTCTGGTCACCTACCAGATGATTTCCAAAGCCAATTCTCGGCTACTAACTTTGATTCTGTGGTTGATATTGAAAGAGGGTTGGCAGCATCAGAACTGTTCAGTTCATCAGCAAGATTTAGCAGGGTGGAGTCTCGATCATTTAAAAGCAACTCTTATTCAGGTCCTCTGAGAACCGGAAGAAGCCGGCGGTTGTGGCAGATGATTAGAAGCCTTTCTAGAGGCAGTGTCAGTGAACATGGAACTATGTTAAAGTTA 2025 0.444 MPFVPPVQALPPPPPNEDCLSTVCTEPSTNSPPGEPCRCVWPMRVGLRLSVSLYTFFPLVSELASEIATGVFMKQSQVRIMGANAANQQPEKTVVLIDLVPLGEEFDHTTAFLTSDRFWHKKVLINAFYFGDYDVLYVSYPGLPPSPPLPPSSLNMFNGGPYSADGNDGRTIKPFGVDIPKRQHKGGVNRSIIAIIAVSVSLAAVLCAAAAWVMFKYRDHVSQPAASLRQLLPPSLNKEPGEPAGSLRGGGVGSISTSFRSSIAAYTGSATIYSMNEIEKATNDFHASRILGEGGFGRVYSGILEDETKVAVKVLKREDRHGDREFLAEVEMLSRLHHRNLVKLIGICIEESLRCLVYELVPNGSVESHLHGVDREKSPLEWSVRMKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLEDDFTPKVSDFGLARTATDEDNKHVSTRVMGTFGYVAPEYAMTGHFLVKSDVYSYGVVLLELLTGRKPVDMSQAPGQENLVAWARPLLTTKEGCQTMVDPSLGADVPFDSVAKVAAIASMCVQPEVSNRPFMGEVVQALKLLCDEAKEEAGSRSCSLEDLSVDLDLEINTDSGHLPDDFQSQFSATNFDSVVDIERGLAASELFSSSARFSRVESRSFKSNSYSGPLRTGRSRRLWQMIRSLSRGSVSEHGTMLKL 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00539 675 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Lapu3g00539 675 Gene3D Transferase(Phosphotransferase) domain 1 361 581 - -
Lapu3g00539 675 CDD STKc_IRAK 291 561 - -
Lapu3g00539 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Lapu3g00539 675 Pfam Protein tyrosine and serine/threonine kinase 287 558 IPR001245 GO:0004672|GO:0006468
Lapu3g00539 675 FunFam Receptor-like serine/threonine-protein kinase ALE2 361 575 - -
Lapu3g00539 675 Gene3D Phosphorylase Kinase; domain 1 257 360 - -
Lapu3g00539 675 PANTHER OS01G0750732 PROTEIN 11 584 - -
Lapu3g00539 675 SUPERFAMILY Protein kinase-like (PK-like) 265 558 IPR011009 -
Lapu3g00539 675 FunFam receptor-like serine/threonine-protein kinase ALE2 258 360 - -
Lapu3g00539 675 ProSiteProfiles Protein kinase domain profile. 285 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00539 Lapu-Chr3 5504184 5509354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00539 16 671 Receptor kinase-like Gene Family AT5G56890 61.940 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lapu3g00539 PK_Tyr_Ser-Thr 3.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00539 - - gmx:100816296 1099.35