Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00537 ATGGCTCCTAGAATCCTTCTATGCGGCGATGTTTTAGGTCGCCTCAACCAACTCTTTAAGCGCGTCTCTTCGGTGAGCAAATCTGCAGGCCCATTCGACGCGCTTTTGTGCGTAGGCCAGTTCTTCCCGGACTCACCGGAACAATTGGAAGAGTTCACGGCGTACATTGAAGGTGGATCCCACGTTCCGCTTCCGACTTACTTCGTCGGCGATTACGGCGTCGCCGCCCCTAAATTTCTCTTGCAAGCTTCCAAGGACTCTGCCAACCGCGGCTTCATGATGGACGGCTTCAAGGTTTGCCACAACTTGTATTGGTTGAAAGGCAGTGGGAAATTCCCCTTGTATGTAGGGTTATCCGTGGCTTATTTATCTGGTAGGAAGTCATCCACTGTTCAACAGTTTGGAACTTACACCGAAGATGATATTGATGCTCTGCGAGCTATTGCGGAGGAACCTGAAATTATTGATCTGTTCTTGACTAATGAATGGCCAAGTGGCGTCACCAATGGAGCAGCTGCTTCGGACATTCCTGCTGGAGTCTCTGATGCCGCAGGCAGTGATTCGACCATATCGGAGTTAGTACAGGAGATCAAACCACGTTATCACATTGCAGGCACAAAAGGTATATACTATGCCCGTGAACCATATACCAATGTTGATGCTGTGCATGTCACCCGTTTCATTGGGCTTGCGGCTGTTGGAAATAGAGATAAACAGAAATTTATTCATGCAATCTCCCCAACACCTGCTTCCTCCATGTCTTCCACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCTTACACATTTGTGGAGAAAAGAAGTTCTCCAGTGGATTCCACAAAGAGATCCAATGATTCTATCTCTGATTCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAGAAACATGAAACTGGACAAGCTGATAAGATGTGTTTCAAATTTGTTTCTTCTGGATCTTGTCCACATGGAGAGAAGTGCCATTTTCGACATGATATAGATGCAAGGGAGCAGTGTAGGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGCGAAAGGGGCCCTGATTGCAACTTTAAGCACGACTTGCAGAATGAAGGTGACAAGCATCCTTCCAGGAGACCTGGGTCTGGCAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGACACATTTAATCATAAGCATTGGGGAAAATTATTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGCACTGATAATACCAGTTGAGCATATGCCTAGTACCTTATCTATGTCTTCTGAATCTGAAATTGAGCTTTCTAGGTTTCAAAACAGTCTCAGGAGTTACTGCAGGAGCCAAGAGAAGGAAGTGATATTTTTTGAGTGGGCCTCCATCCGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTTATGGTCGAAAAAATTTTCAATTTAGCTGCACAAAAGTTGGGATTTGAATTTGTGGCCAAGACATTTGATAGCATTTCTGATGGAAGGAAGTTTTTGAAGACGCAAATTGATGGGGGTTCGAGCTTGTTCTATGCTCAAGTCCCAGGAGGCACAATTCTGCTGCATCTTGTTGAAGAGAACGAGAAATTTCCTGCCCAATTTGGCCGTGAGGTTATGGCTGGGTTGCTCAATATGGCAGATAATGCCGATTGGAGGAATCACAAACATAGCAAAGATGAGGAAATGAAAATTGTTGAAAATTTCAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAG 1809 0.4439 MAPRILLCGDVLGRLNQLFKRVSSVSKSAGPFDALLCVGQFFPDSPEQLEEFTAYIEGGSHVPLPTYFVGDYGVAAPKFLLQASKDSANRGFMMDGFKVCHNLYWLKGSGKFPLYVGLSVAYLSGRKSSTVQQFGTYTEDDIDALRAIAEEPEIIDLFLTNEWPSGVTNGAAASDIPAGVSDAAGSDSTISELVQEIKPRYHIAGTKGIYYAREPYTNVDAVHVTRFIGLAAVGNRDKQKFIHAISPTPASSMSSTEIAMKTTNTTLSPYTFVEKRSSPVDSTKRSNDSISDSQYWRYDVSQKRQKHETGQADKMCFKFVSSGSCPHGEKCHFRHDIDAREQCRRGVCFDFLNKGKCERGPDCNFKHDLQNEGDKHPSRRPGSGRSKECWFCLSSPNVETHLIISIGENYYLALAKGPLVEDHALIIPVEHMPSTLSMSSESEIELSRFQNSLRSYCRSQEKEVIFFEWASIRGTHANLQAIPIPSSKAVMVEKIFNLAAQKLGFEFVAKTFDSISDGRKFLKTQIDGGSSLFYAQVPGGTILLHLVEENEKFPAQFGREVMAGLLNMADNADWRNHKHSKDEEMKIVENFKSRFQEYDPNC* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00537 602 SUPERFAMILY CCCH zinc finger 313 337 IPR036855 GO:0046872
Lapu3g00537 602 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 601 IPR040194 -
Lapu3g00537 602 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Lapu3g00537 602 SUPERFAMILY HIT-like 387 455 IPR036265 -
Lapu3g00537 602 Pfam Protein similar to CwfJ C-terminus 2 521 599 IPR006767 -
Lapu3g00537 602 CDD MPP_CWF19_N 6 233 - -
Lapu3g00537 602 Gene3D - 299 371 - -
Lapu3g00537 602 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Lapu3g00537 602 Pfam Protein similar to CwfJ C-terminus 1 385 496 IPR006768 -
Lapu3g00537 602 SMART c3hfinal6 312 337 IPR000571 GO:0046872
Lapu3g00537 602 SMART c3hfinal6 344 369 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu3g00537 CwfJ_C_1 1.9e-36 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00537 K24939 - gmx:100782106 1106.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00537 3 5490047 5496713 Lapu3g00537 3 5490047 5496713 ECH