Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00529 ATGGATGCTGTGTTTGCCCTCCCTGAAGCCCCCAGAGCTTATTTTCTCCGCTCTCTGCTACAATCTTTTGGCTGCACTTATGTTTGTCTGTGGCAATATGACTCCAGTTTATCCAATCGTCTGTTCTTCCTTGATGGTTTCTATGATCTTGCCAACAACCAACCAAGTTCTTCTTTAGGGAGTGAAGCTGAAAGGCTTTTCCAGCAGTTTCGGGCTTTAACGTTTGATGTCAGTGATAAATGTGTTCCTGGAGTTGCTTTCAGGAATCAACATCCCTACGTAGAGCTCAACCTGTTGGATCTACTACCACTCACATCCACTGAAATACAAACACAATTCTTTCAGATGGCTGTTTTCATGGGGTGCAAAATGGGAGAAATTGAGCTTGGCTTCTCCAACATTTCTCAAGCTGACATTCAAGCAGAACTTAAGAATTTATTTCCAGAAGATTTCTGTACACATTCCCAATCAATTGATCAGAATCCACATTCATCATCATCTTCTTTCGTATCAATATCTACGGATAGCTCTAATCAACGTTCACCCGTAACACCCAATATTCTGGGTACTTGCCACTCCAACTTTCCTGAAGCCCTTGGTGTGGCTCCCACACAACCTAGTCTTCACCAACAAAGTATCCAATCATTCTCTCAACTCATTCCAAGCTATATACCCACAGCAGATGGTGAACACGAAGAAATAGTAAGAACATTAGTCCAAGTTATGTCTTCAACTTCTCAGCAGCATCAACCCCACCAAATTTTGCCTCATACTTCTGTAATACATCCTGGAGCTGCCGCTTTCACTAGATATAGATCAGATATGATAAACCCAAATATAAAACCCCATACGGAGACCAATTTTCTCGGGCAAAGCCTGCAGAACAGATCATTTTCCTTCTTTAAAAGCTTAAATTCAATGAGAATGAGAGAACGCAATACTATTCAAGCAACCGACCGCATCAGTACCCAGCAGCATTATTTTCATATGATATCAGAGAGAAGAAGGCGTGAAAAACTCAACGAGAGTTTTCAGGCACTTAGAGCACTTCTTCCTCCGGAAACTAAGAAAAGTAAAGCGACGATCCTCATAACAGCAAAGGAGACAATAAGATCTTTGATGGATGATATTGAAAAGCTTAACACGAGAAAACAGAAGCTGGTGACAGATTTGTCAGACAAGGAGGGTAGTAGTAGTAAAGAAAATAGAGGTCGGTTCTCTGATGAAAGATTGAATGTTAGGGTTTTGCATGCATCGGTATCATCATCAGAAGAGCAAATGGTGGAATTGCAAGTGACGGTGAGAGAACAAAGTTCTCAAGTTCATGTATTGATTCGCATATTGCAATTCTTAGAAGGGGTTCAGAACGTAACCTTGATTTCCACGAACACAAACCCGCATATTACAGAAGGAGGGACACCCATTAATGAATTAACCTTCAGGCTGAGGATTATTGAGAGCAATGAATGGGACGAAGGTGCGTTCGAGGAAGCCATTAGAAGAATGGTATCTGACCTAATACAATGCCAACTCCAACAATAA 1542 0.4131 MDAVFALPEAPRAYFLRSLLQSFGCTYVCLWQYDSSLSNRLFFLDGFYDLANNQPSSSLGSEAERLFQQFRALTFDVSDKCVPGVAFRNQHPYVELNLLDLLPLTSTEIQTQFFQMAVFMGCKMGEIELGFSNISQADIQAELKNLFPEDFCTHSQSIDQNPHSSSSSFVSISTDSSNQRSPVTPNILGTCHSNFPEALGVAPTQPSLHQQSIQSFSQLIPSYIPTADGEHEEIVRTLVQVMSSTSQQHQPHQILPHTSVIHPGAAAFTRYRSDMINPNIKPHTETNFLGQSLQNRSFSFFKSLNSMRMRERNTIQATDRISTQQHYFHMISERRRREKLNESFQALRALLPPETKKSKATILITAKETIRSLMDDIEKLNTRKQKLVTDLSDKEGSSSKENRGRFSDERLNVRVLHASVSSSEEQMVELQVTVREQSSQVHVLIRILQFLEGVQNVTLISTNTNPHITEGGTPINELTFRLRIIESNEWDEGAFEEAIRRMVSDLIQCQLQQ* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00529 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 388 IPR036638 GO:0046983
Lapu3g00529 513 MobiDBLite consensus disorder prediction 156 182 - -
Lapu3g00529 513 SMART finulus 330 379 IPR011598 GO:0046983
Lapu3g00529 513 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 106 505 IPR044658 -
Lapu3g00529 513 Coils Coil 363 390 - -
Lapu3g00529 513 CDD bHLH_AtbHLH_like 329 380 IPR045239 -
Lapu3g00529 513 Gene3D - 323 397 IPR036638 GO:0046983
Lapu3g00529 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 373 IPR011598 GO:0046983
Lapu3g00529 513 Pfam Helix-loop-helix DNA-binding domain 329 373 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00529 Lapu-Chr3 5399514 5403508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00529 1 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 36.081 2.37e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g00529 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00529 - - pvu:PHAVU_003G135700g 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00529 3 5399514 5403508 Lapu3g00529 3 5399514 5403508 ECH
Lapu3g00529 3 5399514 5403508 Lapu9g00433 9 4586311 4590175 PCT