Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00524 ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGTACCAATATTCAAACGAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGCTGTACAGAATCCTACAGGGAGGAACTGGAATCCCAAACGTCAGATGGTTTGGAGTCGAGGGAGATTACAATGTTTTAGTGATGGATCTGCTTGGACCCAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAACTATCACTAAAGACAGTCCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCTAAATCGTTTCTGCATCGAGATATCAAACCAGATAATTTTCTAATGGGATTAGGAAGGCGTGCAAATCAGGTTTATGCTATTGATTTCGGATTGGCTAAGAAGTACAGAGATAGTTCAACTCATCAACATATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCGAGATATGCTAGCATGAATACTCACCTTGGTATTGAGCAAAGCAGAAGAGATGATCTTGAGTCTCTTGGTTATGTTTTGATGTATTTCCTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACGAAGAAACAGAAGTACGAGAAAATCAGTGAAAAGAAGGTTTCTACCTCGATTGAAGCCTTGTGTCGTGGCTATCCAACGGAATTTGCATCTTACTTCCATTACTGCCGGTCATTGAGGTTTGATGATAAGCCCGATTATGCTTACCTCAAAAGGATATTTCGGGACCTTTTTATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAGTATCAGCAATCACAGTTGGCCACTCCTCCAACACGGGCCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCCCCAGCTGTTACTAATGCTGATAGGCATACAGGAGGGGAAGAAGGGCGACCTCCTGCTTTGGTTTCAGTGGATTCCTCGAGGCGCAGAATGTCAGGGCCCATTTTAAATGCTTTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTGGATCATCAAGGCGGGTTGCTGTTTCTGGTAGCCGAGATGCATTTGTTGGTACTGAGTCGGATATTCGTACGGATATTCGTACTCGTACTGCTGATGCTAGCCCTGGAGTAGCACACAGAGGTTTGAGTGGGCAAAGAATTTCACCAATTGGGTCTTCTGATCCCAAGAGGGTTGTATCATCCGGGAGAAACGCTTCTCATGTGAAAAATTATGACTCTGTACTCAGGGGCATGGATGGTTTGCAATTAGAGAATGATGAGAGGACCCATTATTAA 1377 0.4357 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIGPSAGTSSGMPPAVTNADRHTGGEEGRPPALVSVDSSRRRMSGPILNALSSANVLGQSSGSSRRVAVSGSRDAFVGTESDIRTDIRTRTADASPGVAHRGLSGQRISPIGSSDPKRVVSSGRNASHVKNYDSVLRGMDGLQLENDERTHY* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00524 458 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lapu3g00524 458 FunFam Putative Casein kinase I 1 85 - -
Lapu3g00524 458 CDD STKc_CK1_delta_epsilon 8 282 - -
Lapu3g00524 458 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00524 458 MobiDBLite consensus disorder prediction 303 322 - -
Lapu3g00524 458 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lapu3g00524 458 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00524 458 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00524 458 FunFam Casein kinase I isoform delta-like 1 308 - -
Lapu3g00524 458 MobiDBLite consensus disorder prediction 303 345 - -
Lapu3g00524 458 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Lapu3g00524 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lapu3g00524 458 PANTHER CASEIN KINASE-RELATED 9 357 - -
Lapu3g00524 458 MobiDBLite consensus disorder prediction 399 432 - -
Lapu3g00524 458 MobiDBLite consensus disorder prediction 413 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00524 Lapu-Chr3 5340864 5347546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00524 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.31e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lapu3g00524 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00524 K02218 - gmx:100811567 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00524 3 5340864 5347546 Lapu3g00524 3 5340864 5347546 ECH