Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00521 ATGCGTTGCGTGGCGTTAACAGTTTCTGTTGTTTTTACAGTCATGGCTGGACTTGCACCTGAGGGGTCACTGTTTGATGGGCGTCAGTATGATTCCAAAATGAGTGACTTGCTTTCTTCTGATGCACAGGACTTCTTCACACCCTATGACGAGGTTTATGAAAGTTTTGATGCTATGGGACTGCAGGAGAATCTTCTGAGGGGCATTTACGCATATGGTTTTGAAAAGCCATCAGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAGTCTGGAACTGGGAAGACAGCTACTTTCTGCTCTGGTATTCTGCAGCAACTTGACTACAGCTTGACCCAATGCCAGGCCTTGGTTTTAGCACCAACTCGTGAGCTTGCTCAGCAGATTGAAAAGGTTATGCGGGCACTTGGAGATTATCTTGGTGTGAAGGTTCATGCTTGCGTGGGAGGTACCAGTGTCCGTGAAGACCAACGCATTCTATCTAGTGGTGTTCATGTTGTGGTTGGTACCCCCGGTCGTGTGTTTGATATGCTTCGTAGGCAATCACTTCAGCCAGATCACATCAAGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTTAAGGATCAGATCTATGATATATTTCAGCTGCTGCCATCTAAGATTCAAGTGGGAGTTTTCTCAGCCACAATGCCTCCCGAGGCCCTTGAGATCACGAGAAAGTTCATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAACTCACCTTGGAGGGTATAAAGCAGTTTTATGTCAATGTTGAGAAAGAGGAATGGAAGCTGGACACCCTTTGTGATCTTTATGAGACGTTAGCAATCACGCAGAGTGTCATTTTTGTGAACACCAGAAGGAAAGTTGATTGGTTGACTGACAAAATGAGAAGCCGTGACCACACTGTCTCAGCAACCCATGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGCTCTTCCCGTGTCTTGATTACAACTGATCTCTTGGCCCGTGGTATTGATGTCCAACAAGTGTCTCTGGTTATAAATTATGATCTCCCTACACAACCGGAGAACTATCTGCATCGTATTGGTCGTAGTGGGAGGTTTGGGAGGAAAGGTGTGGCCATCAACTTTGTCACAAAGGAAGATGACAAAATGCTGTTTGACATCCAGAAGTTTTACAACGTGCTAGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTAA 1284 0.4579 MRCVALTVSVVFTVMAGLAPEGSLFDGRQYDSKMSDLLSSDAQDFFTPYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDDKMLFDIQKFYNVLVEELPSNVAELL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00521 427 CDD DEADc_EIF4A 58 256 - -
Lapu3g00521 427 Gene3D - 263 427 IPR027417 -
Lapu3g00521 427 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 201 209 IPR000629 -
Lapu3g00521 427 CDD SF2_C_DEAD 267 397 - -
Lapu3g00521 427 SMART ultradead3 73 270 IPR014001 -
Lapu3g00521 427 Gene3D - 45 262 IPR027417 -
Lapu3g00521 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 85 255 IPR014001 -
Lapu3g00521 427 FunFam Eukaryotic initiation factor 4A-II 42 261 - -
Lapu3g00521 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 54 82 IPR014014 GO:0003724
Lapu3g00521 427 Pfam Helicase conserved C-terminal domain 280 388 IPR001650 -
Lapu3g00521 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 427 IPR001650 -
Lapu3g00521 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 408 IPR027417 -
Lapu3g00521 427 PANTHER RNA HELICASE 44 411 - -
Lapu3g00521 427 FunFam Eukaryotic initiation factor 4A-III 262 427 - -
Lapu3g00521 427 SMART helicmild6 307 388 IPR001650 -
Lapu3g00521 427 Pfam DEAD/DEAH box helicase 79 240 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00521 Lapu-Chr3 5321596 5324607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00521 15 427 Eukaryotic Initiation Factors Gene Family AT1G72730 87.681 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00521 K03257 - gmx:112999960 798.505